Query= MSMg01no112_a04.b1 MSMg01no112_a04.b1 CHROMAT_FILE:
MSMg01no112_a04.b1 PHD_FILE: MSMg01no112_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:02 2005
(205 letters)
>mm_chr2_73370527_73371131
Length = 605
Score = 311 bits (161), Expect = 1e-89
Identities = 194/205 (94%)
Strand = Plus / Minus
Query: 1 acaactgaaagcaatacaaatgtccactgttacagaatttggctggattgtggtacataa 60
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 405 acaactgaaagcaatataaatgtccactgttagagaatttggctggattgtggtacataa 346
Query: 61 tacagccaaaaatatgtagtttttaaaaaagaacaaattagatttgttgagtcttaagag 120
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 345 tacagttaaaaatatgtagttaaaaaaaaagaacaaattagatttgttgagtcttaagag 286
Query: 121 gaatggaaagataaactttcatacccatgagaattccatccctagagtttccaccagtta 180
||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 285 gaatggaaagataaactttcatacccatgcgacttctatccctagagtttccaccagtta 226
Query: 181 ttcaaactggccctaatctataagc 205
|||||||||||||||||||| ||||
Sbjct: 225 ttcaaactggccctaatctagaagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space: 117609
Effective search space used: 117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no112_a04.g1 MSMg01no112_a04.g1 CHROMAT_FILE:
MSMg01no112_a04.g1 PHD_FILE: MSMg01no112_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:02 2005
(232 letters)
>mm_chr2_73212667_73213298
Length = 632
Score = 397 bits (205), Expect = e-115
Identities = 228/241 (94%), Gaps = 9/241 (3%)
Strand = Plus / Plus
Query: 1 agtaggtacctgaggaggaggatgccccaagtgaacaaagaaaacttcattaaggaagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 agtaggtacctgaggaggaggatgccccaagtgaacaaagaaaacttcattaaggaagat 251
Query: 61 gagagtcagccggtaaagggtgatggaggaaatggctagcatggaggggtggccaagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gagagtcagccggtaaagggtgatggaggaaatggctagcatggaggggtggccaagcca 311
Query: 121 gacaacagcaagag---------tgacatcctacacaggaccagggagctatacggaaga 171
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 312 gacaacagcaagagggcagagagtgacatcctacacaggaccagggagctatacggaaga 371
Query: 172 aggtgctagtcatacctacccttgcttatggggcatttccgctataaggaaaatgcttcc 231
||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct: 372 aggtgctagtcatacctacccttgcttatggggcacatcggctatgaggaaaatgcttcc 431
Query: 232 a 232
|
Sbjct: 432 a 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space: 138929
Effective search space used: 138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
