Query= MSMg01no112_b19.b1 MSMg01no112_b19.b1 CHROMAT_FILE:
MSMg01no112_b19.b1 PHD_FILE: MSMg01no112_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:10 2005
(611 letters)
>mm_chr2_102909558_102910568
Length = 1011
Score = 1038 bits (537), Expect = 0.0
Identities = 569/581 (97%), Gaps = 6/581 (1%)
Strand = Plus / Minus
Query: 34 aagac-agatttggattatatatttttttactatt--tattcttttatttgggtagggat 90
||||| ||||||||||||||| ||||||| | || |||||||||||||||||||||||
Sbjct: 1011 aagacaagatttggattatat-ttttttt--ttttactattcttttatttgggtagggat 955
Query: 91 aggagtgccacagcatgtattgaaggtcagaggacaacttgtgggattcagttctctcct 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 aggagtgccacagcatgtattgaaggtcagaggacaacttgtgggattcagttctctcct 895
Query: 151 tccatcattgggttccagggactgaactcaggccaccattcttggctgaaagctctttta 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 tccatcattgggttccagggactgaactcaggccaccattcttggctgaaagctctttta 835
Query: 211 cctgtcaagccacttcgtgagccagagacttggattttactaaggtattaagcattaccc 270
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 cttgtcaagccacttcgtgagccagagacttggattttactaaggtattaagcattaccc 775
Query: 271 caggcgtctaggtggaacgttgcttgtgttttgcaatcacttctactcattcttttcata 330
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 caggcgtcaaggtggaacgttgcttgtgttttgcaatcacttctactcattcttttcata 715
Query: 331 cactcctggaatttgaatatgttctccgaaaacttatatgttggcaactaaacacccaaa 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cactcctggaatttgaatatgttctccgaaaacttatatgttggcaactaaacacccaaa 655
Query: 391 tccacttgataatggtagagaagaaggttagaattaggtgaaaccagaagagtagtgccc 450
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tccacttgataatggtagagtagaaggttagaattaggtgaaaccagaagagtagtgccc 595
Query: 451 catgatagatagcattaatgtcttacaaagaggaagtcaaaccaaaccaagctagcatac 510
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 594 catgatagatagcattaatgtcttaaaaagaggaagtcaaaccaaaccaagctagcatac 535
Query: 511 ttggttactgctgtaccaaatccccttgcgttgtattgggcagaactgattcatgaacca 570
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttggtcactgctgtaccaaatccccttgcgttgtattgggcagaactgattcatgaacca 475
Query: 571 gttactgactctgtaataattgaatttgttttgattaaaaa 611
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gttactgactctgtaataattgaatttgttttgattaaaaa 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_b19.g1 MSMg01no112_b19.g1 CHROMAT_FILE:
MSMg01no112_b19.g1 PHD_FILE: MSMg01no112_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:10 2005
(565 letters)
>mm_chr2_102752834_102753798
Length = 965
Score = 1077 bits (557), Expect = 0.0
Identities = 563/565 (99%)
Strand = Plus / Plus
Query: 1 attattgatgttatcaaccagacacccagagaagagctctcacaggatatctcaattaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attattgatgttatcaaccagacacccagagaagagctctcacaggatatctcaattaat 260
Query: 61 tctgtgctggaggatggctagtgccacttaaagaatcagaggatcagaaaaaatttactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtgctggaggatggctagtgccacttaaagaatcagaggatcagaaaaaatttactc 320
Query: 121 aattgtccatacatatgtagacagaaagctatagaatgtgatctaagctgaaagcctcag 180
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 321 aattgtccatacatatgtagacagaaaggtatagaatgtgatctcagctgaaagcctcag 380
Query: 181 tcacgacactgtgatgctagcccctatggatggaggacaggagaagacaaagtagctgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacgacactgtgatgctagcccctatggatggaggacaggagaagacaaagtagctgtg 440
Query: 241 acaccttctttatcatctgagaacttttccccttctcacaccttgatgtttgcttctctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaccttctttatcatctgagaacttttccccttctcacaccttgatgtttgcttctctt 500
Query: 301 cctgtactttactcaattgtacttcacttcctctagagagctgtttgtggtgtgtgtcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgtactttactcaattgtacttcacttcctctagagagctgtttgtggtgtgtgtcta 560
Query: 361 tgcctcttctttatcctgtctcatgcatgtctctgcctgcacctcggggatgctgacaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcctcttctttatcctgtctcatgcatgtctctgcctgcacctcggggatgctgacaat 620
Query: 421 agcccagtcaagctacagaaacccttctggaaactccaggaactaagtgatccagagtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcccagtcaagctacagaaacccttctggaaactccaggaactaagtgatccagagtca 680
Query: 481 gggtcaagatttcccttcctttgatgctatgggaacctgtactcagggctacactatctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggtcaagatttcccttcctttgatgctatgggaacctgtactcagggctacactatctg 740
Query: 541 attcaagttgaaacgtgagctggtc 565
|||||||||||||||||||||||||
Sbjct: 741 attcaagttgaaacgtgagctggtc 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
