BAC Information

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BAC

Clone NameMSMg01-112C17
Chromosome2 (Build37)
Map Location 5,021,344 - 5,021,681
singlet/doubletsinglet
Overlap genenone
Upstream gene1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn
Downstream geneCcdc3, LOC100040292, Camk1d, LOC666599, Cdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112C17.T7 (MSMg01no112_c17.b1)MSMg01-112C17.TJ (MSMg01no112_c17.g1)
ACCAG324654AG324655
length726734
length of high quality
(start - end)
319 (33 - 351)342 (77 - 418)
definitionCHROMAT_FILE: MSMg01no112_c17.b1 PHD_FILE: MSMg01no112_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:14 2005CHROMAT_FILE: MSMg01no112_c17.g1 PHD_FILE: MSMg01no112_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCATGTT
TTTTACCCATCCTTACTTGTCATTTTTCCAGTTTAGACTAGCTTCTAGCC
TTTTAACTTTATGCCCATAGTACATCAGAGACTGTATATTCTGACTTAGT
AAAATTAGTCATTTAATAGAGTCATAATGATTTTTCTCTTTTCTTCAGTG
TGACCAGTCATTCTAACTCAATCTTAGACTGGTCTAATATTCAGTCCAAT
GTTAGAGATTCCTATATTCTAAATTACCTAGCAAAGTTAATTCAGAGCAC
ATCCCCCACTTCCTCTAGATCCCTAACCTCATAAGGATTGCTGGCCTTAC
TTTTTGTGAACAAAGCTATTAAAGAGCAATTGGTCACTTAATACATTGGT
AAAATACAACGACCCCCTGACTAACAAATGGAAGGGTCCAGATCCAGTTC
TAATTTGGGGCAGGGGCTCAGTTTGTGTTTTTTCACGAGATGAAGATAGA
GCGCGGTGGCTGTCATATAGATTAATTCATCAGATGACCACAGATTCTAA
ATCTTCTAATGTATCACCTTGATGATTAACATTCCTCTTCTGCTCACAAG
TCATCTTGAGGACTCAGGCTCCCAAAAAGTTACTCTCTGATTCAGTTCCC
TGTATTGGAGCCCGGATATTATCCTCATCTTCTCACACTTTGTATTTGTA
TTACCGTTCCTGTACCTTCCCACACN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGCAACTCGATTAGGTCTTTT
CTTAATTTTCATGAAAGCGAAGAATCACAAACCTCCTGGGATTTGCAGAA
AGATGTATTACTCCATCAATAGATCATTAATTTTCTTTACTTTAAAAAAA
AAATTGGTTTTGGTCTGGCTTCCCAGAGCCCTAGTCCCCTGAGGTAATGG
CTGGCTAGTGAGACGAGGAATGGAGAGAAATGTGTCTTGTGTCTGTGATG
TGGTTATTAAATAGAAGGATCATAAAGGAGAGCTCTCAGTTCCATCTAAC
AGCTCCCCACCATCCGGTGCTCAAAAGAACTATTTTAGGAATAAGTAAAA
TTAAAAAAAAAAAATCGCTACCCCTGCGTGACCTTAGAAGGTGAGCATCT
AGTCCTAAGGATCCAAGTACCCAAACTGGAAGGTCTTGGAATCTCTGCTA
GGAGCTAAGTCCCCATGATGAATGGCTACACTGCTAGAGCTCCTCTGACA
CCCTCAAAGGGCCTCTCCCAGGCCCTCACAGCACCCTTCCGAATGTCAGA
GTCCAGTACAAGGAATTCTCAGAGACAGGGATTCGGAAGCCCACCCTATT
GTTACTGTCCCTTACTTTAGAGACTCACAATAAATCTGGTGTGACACCCC
ACGCTGAATCCCTGATGCCTGGCACACCGGACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_c17.g1 MSMg01no112_c17.g1 CHROMAT_FILE:
MSMg01no112_c17.g1 PHD_FILE: MSMg01no112_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:14 2005
         (342 letters)



>mm_chr2_5021034_5021775
          Length = 742

 Score =  615 bits (318), Expect = e-180
 Identities = 333/338 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagcaactcgattaggtcttttcttaattttcatgaaagcgaagaatcacaaacctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 648 tctagcaactcgattaggtcttttcttaattttcatgaaagcgaagaatcagaaacctcc 589

                                                                       
Query: 61  tgggatttgcagaaagatgtattactccatcaatagatcattaattttctttactttaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 588 tgggatttgcagaaagatgtattactccatcaatagatcattaattttctttacttaaaa 529

                                                                       
Query: 121 aaaaaaattggttttggtctggcttcccagagccctagtcccctgaggtaatggctggct 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 528 aaaaaaattggttttggtctggcttcccagagccctagtcccctgaggcaatggctggct 469

                                                                       
Query: 181 agtgagacgaggaatggagagaaatgtgtcttgtgtctgtgatgtggttattaaatagaa 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agtgagatgaggaatggagagaaatgtgtcttgtgtctgtgatgtggttattaaatagaa 409

                                                                       
Query: 241 ggatcataaaggagagctctcagttccatctaacagctccccaccatccggtgctcaaaa 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggatcaaaaaggagagctctcagttccatctaacagctccccaccatccggtgctcaaaa 349

                                                 
Query: 301 gaactattttaggaataagtaaaattaaaaaaaaaaaa 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gaactattttaggaataagtaaaattaaaaaaaaaaaa 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)