BAC Information

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BAC

Clone NameMSMg01-112G22
Chromosome2 (Build37)
Map Location 145,669,516 - 145,669,822
singlet/doubletsinglet
Overlap geneRin2
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810
Downstream geneNat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik, LOC668918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112G22.T7 (MSMg01no112_g22.b1)MSMg01-112G22.TJ (MSMg01no112_g22.g1)
ACCAG324847AG324848
length749778
length of high quality
(start - end)
308 (73 - 380)53 (74 - 126)
definitionCHROMAT_FILE: MSMg01no112_g22.b1 PHD_FILE: MSMg01no112_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:35 2005CHROMAT_FILE: MSMg01no112_g22.g1 PHD_FILE: MSMg01no112_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCGCGGA
ATTCAAGGTCATATGCCCCAAACATAATGAGACCTTGCCTCAACAGCAAC
AAACAAACAACCCGAACCCCACAAATAAACAACTAAAAAAAACATTTAAA
AAAAAAACAGAGATGCAACCCAAAATGTGACTACTGATAAGAGGCTAAGC
TAGATTACTCAGCTACAAAGTGGAAGGCTACCACACAATGCCCCTGGAGA
ACAGCATGCTAAGTGAGAAGAGCCAGGTGTGTGAGTCTGTCACCTGCTGT
GGTGGTGGGGCAACGGGGCACTGAGCTTAGGTCACAGTATTATCTGACTC
AATTGTACAAGTTCATAATGGGAAAAGTCTTACGGAGAGAAAGTTGGTTA
GCGGTTGGCTAAGATTAAAGCACACAGAGATGACAATCAACTACAAACAG
GTACCAGGCGTCTTTGGCAGTTGTAGGGAATGTGGTACGTGCTAACAACA
AGGACTACACTATGCCATGAATCTCCTACAAACTCCGGAATGACTCATGT
CCCACAAATGTAGAGGTTTTGTGTTCTGTGACTCACATCGACCCATAATC
CTCCTCCACTGCCAACACTTAACTGTACGTGATGCCTGAACAAACTGAAC
CCTGAGGATGTATGCAGCTGCTGGACTCTGCCAGCGTGCAACCACTCCCT
TACTTCTTGATCCCCACCCTATGATGCTGCTTTTAAGCAGGCGATGGTN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGTCCTACTCGGTCACTGACCTGCCG
GTCGCCCCCGCCTCCCAGATCTGCACCTAGGGAGCATGGTAAGGGTTGGC
ATATGCGGAGACCACACCTCAAGTGGGAGAACCGGGCACCATGCGCTAGG
TGCAGTTCCCCACTGCCCTACTGTCGCTTGAGATAAGGAGAGAGCCTACC
TGCTGGCGTCCTCAGCGGTCCTAAAGGACCGATAGTGGAAGGATGTATGG
GCAGCCTGGACACCAGGACTTGAGTTATAGCGACATTCTGTAGTCGGATT
CCAGGATGATCACGGGTTGTCCTCGGCTGACCTTTGCAGAGATTGGTTAG
GTGGCAAACCACCGAGGGCACCGGCCGGATGATTGTCGATGCTTTCGCGT
GTTCCTACGAGCGCACCCAGTAGCTGGGATGTATAGAGACCCTTGTTGAT
TTCTACCTGTGGCGCCGCCTGCCTTGTGTCTTATGCGTCTGCGCTGGCTC
GATCTCTTGAGTTAGTGCTGAGTTGCATAGTATACGTCGTTGTTCGCCTT
TTTCTCCTTCATTGTGTTTCATCAGCTTCTGCCCAACCCCCCGGTATTTT
CTTCTGCTCTGGTTTAGGCAGTAGAATGCACGGCGTTTTCTGCCCTCTTA
TTNGTTGGTGTTTTTTGTTATTCTCCGCTCGCTTAACGGTACCGTGCTCC
CTTTTTCCCCTCCTTGTAACGGCCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_g22.b1 MSMg01no112_g22.b1 CHROMAT_FILE:
MSMg01no112_g22.b1 PHD_FILE: MSMg01no112_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:35 2005
         (308 letters)



>mm_chr2_145669316_145670022
          Length = 707

 Score =  549 bits (284), Expect = e-161
 Identities = 302/308 (98%), Gaps = 1/308 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataatgagaccttgcctcaacagcaacaaacaaacaacccgaaccccacaaataaacaa 60
           |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 catagtgagaacttgcctcaacagcaacaaacaaacaacccgaaccccacaaataaacaa 448

                                                                       
Query: 61  ctaaaaaaaacatttaaaaaaaaaacagagatgcaacccaaaatgtgactactgataaga 120
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttaaaaaaaaca-ttaaaaaaaaaacagagatgcaacccaaaatgtgactactgataaga 389

                                                                       
Query: 121 ggctaagctagattactcagctacaaagtggaaggctaccacacaatgcccctggagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggctaagctagattactcagctacaaagtggaaggctaccacacaatgcccctggagaac 329

                                                                       
Query: 181 agcatgctaagtgagaagagccaggtgtgtgagtctgtcacctgctgtggtggtggggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agcatgctaagtgagaagagccaggtgtgtgagtctgtcacctgctgtggtggtggggca 269

                                                                       
Query: 241 acggggcactgagcttaggtcacagtattatctgactcaattgtacaagttcataatggg 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 268 acggggcactgagctaaggtcacagtattatctgactcaattgtacaagttcagaatggg 209

                   
Query: 301 aaaagtct 308
           ||||||||
Sbjct: 208 aaaagtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 707
Length adjustment: 9
Effective length of query: 299
Effective length of database: 698
Effective search space:   208702
Effective search space used:   208702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)