BAC Information

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BAC

Clone NameMSMg01-112O22
Chromosome2 (Build37)
Map Location 171,744,119 - 171,744,623
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112O22.T7 (MSMg01no112_o22.b1)MSMg01-112O22.TJ (MSMg01no112_o22.g1)
ACCAG325210AG325211
length739738
length of high quality
(start - end)
525 (47 - 571)351 (79 - 429)
definitionCHROMAT_FILE: MSMg01no112_o22.b1 PHD_FILE: MSMg01no112_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:13 2005CHROMAT_FILE: MSMg01no112_o22.g1 PHD_FILE: MSMg01no112_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCAGTATTTTTGCCCAGTTCTATCACCATCAGGGACAGCCAGAGTAA
CATTGATTACCTACTAGTGAGCAATCGCATTATTCACTGCAAGCTATGAT
GAGACATCTTCAGACCTCTTGCAGCTTTTAAGTCTATTTAGGAGCTTGCT
TAGCATAGCTGGGATGGTTTGGGAGAGATGGCTGATGAGGAAGTGTTTCT
TCATCTATCACAGCCCTCCAGGAATTTACACATCTCCCTCCTAATCCATG
ATTCTGCACCAGTGGCATTCATCAGCAAGATAGGGACTGCCCCCAATAGA
CACAAATAACTAAACTCCCAAGCCCTGAGAACACAGAGGGAAAGCACATG
TGTGCACATGTGTGCATGACTAGAGCATCCATGGGAAAATTTGCACAACC
CAGCAGCAGAAGTAACAAGGCAAATGTGTGGCTCAGTGGCTAGAGCAGTG
TCTGCCATGACTATATAACCTCTGAGGTTTTGGAATTAAATGCCTGTTTC
TTCTTCAAATATGAACTTGTCGACATATACACCAGTTTTATAAACTGCAT
TTCCCTACAAGTGTATCATGAACTAGCCCCCCCCCCGTCCCTCTTCCTAC
TATTTCCATCCATTACTCTCCATAAAATCTTGCTTCTATTTCCAAGTTCT
GCATATACACATGACTGTCTATCTGCATAAGGTTGGGGN
CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCAGAAATTACCAGCCCATGATCTTGCTCAAGGAC
ATTTCTAGGACTGTTGGAACACTGGTGGAAGGCTTTAGCCATGTCAGAAT
TCAATTTTAAAAAGCACTTATAATAGGAAAATACTGAAAGAGAGCACGTG
GATCCATACACTAGACTAACTCGGGAATGGAAAATTAATGTATGGGTAGG
GAATGCTAGACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATG
AGTGACTTTTAAGCCTTTCGGCTTGTCTAGCTGACTCGACCGGAGAGTGT
AGCATGTGTCCTCACAATGTTAGTGTGTCCTCACAATGGCAGTGTGTCAT
GTCTGCACAATGTAGTCCAGCCAGCAGTAAAGAAGAGTGAGATTCTCTCA
CTTACAGGAAAATGGGACAATCTGGCAGTTATCCCAAAGAGGAAAATATC
CTCACACAATTACATACTCATGTATAAAGACATGTGCACCCAAATGCACA
CACACACACACATACACATATGTACACACCGACATGTAGTACAAGATCAG
AAGGGAGCCCTATGGTAAGACTAGGAACAGCGAGTGGACAGAAGTTGTTG
GGGCGTGAATATACTCAGTTATGATGCAATTGAACAAAACCATCATACAA
CCCCATCACTTGTTCCATTAACCATAGACTTCAGTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_o22.b1 MSMg01no112_o22.b1 CHROMAT_FILE:
MSMg01no112_o22.b1 PHD_FILE: MSMg01no112_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:13 2005
         (525 letters)



>mm_chr2_171743897_171744824
          Length = 928

 Score =  803 bits (415), Expect = 0.0
 Identities = 486/521 (93%), Gaps = 19/521 (3%)
 Strand = Plus / Plus

                                                                       
Query: 7   ttcagtatttttgcccagttctatcaccatcagggacagccagagtaacattgattacct 66
           ||||||||||| |  ||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 223 ttcagtattttgggacagttctatcaccatcatggacagccagagtaacattgattaccc 282

                                                                       
Query: 67  actagtgagcaatcgcattattcactgcaagctatgatgagacatcttcagacctcttgc 126
           ||||||||||||| |||||                |||||||||||||||||| ||||||
Sbjct: 283 actagtgagcaatggcatt----------------gatgagacatcttcagacgtcttgc 326

                                                                       
Query: 127 agcttttaagtctatttaggagcttgcttagcatagctgggatggtttgggagagatggc 186
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 327 agcttttaagtctatttaggagcttgcttagcatagccaggatggtttgggagagatggc 386

                                                                       
Query: 187 tgatgaggaagtgtttcttcatctatcacagccctccaggaatttaca---catctccct 243
           |||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 387 tgatcaggaagtgtttcttcatctatcacagccctccaggaatttacatatcatctccct 446

                                                                       
Query: 244 cctaatccatgattctgcaccagtggcattcatcagcaagatagggactgcccccaatag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cctaatccatgattctgcaccagtggcattcatcagcaagatagggactgcccccaatag 506

                                                                       
Query: 304 acacaaataactaaactcccaagccctgagaacacagagggaaagcacatgtgtgcacat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acacaaataactaaactcccaagccctgagaacacagagggaaagcacatgtgtgcacat 566

                                                                       
Query: 364 gtgtgcatgactagagcatccatgggaaaatttgcacaacccagcagcagaagtaacaag 423
           |  |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 567 gcatgcatgactagagcatccatgggaaattttgcacaacccagcagcaaaagtaacaag 626

                                                                       
Query: 424 gcaaatgtgtggctcagtggctagagcagtgtctgccatgactatataacctctgaggtt 483
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 627 gcaaatgtgtggctcagtggctagagcagtgtccgccatgactatataacctctgaggtt 686

                                                    
Query: 484 ttggaattaaatgcctgtttcttcttcaaatatgaacttgt 524
           ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 687 ttggaattaaatgtctgtttcttcttcaaatatgaacttgt 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 928
Length adjustment: 10
Effective length of query: 515
Effective length of database: 918
Effective search space:   472770
Effective search space used:   472770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)