BAC Information

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BAC

Clone NameMSMg01-113H13
Chromosome2 (Build37)
Map Location 36,013,496 - 36,014,099
singlet/doubletsinglet
Overlap geneMrrf
Upstream geneRab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236
Downstream geneLOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113H13.T7 (MSMg01no113_h13.b1)MSMg01-113H13.TJ (MSMg01no113_h13.g1)
ACCAG325599AG325600
length689691
length of high quality
(start - end)
606 (72 - 677)191 (73 - 263)
definitionCHROMAT_FILE: MSMg01no113_h13.b1 PHD_FILE: MSMg01no113_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:54 2005CHROMAT_FILE: MSMg01no113_h13.g1 PHD_FILE: MSMg01no113_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGCCTATCCCCTGTCTTTGAGTTCCTCCCCAGCTCTTAT
GTCTGAAAGGCACGGAGGGTGGCACACACCAATTTTATTTCTCCAAGCAT
CTCACTGTTAATGTTTTAGAGGAGGTATCTAAAAAACTTCCATTCCATCT
TTAAATAACCTTAATTCTATACCTATATGAGGTCAAAATGTCAAACTAGA
ATATCCACACCCAGGTGTGAAGAATCTAAAGCTTTAAAATGGCATTTCTG
GCATAGACTCTCAGGTTGGAAAGGGAGCTGTGATATAACCAAGCACCAGT
TGTTGACTGTGAACAAGTGGCCTACAGGGTAAAGCCAAATCCTTTAGAAC
AGACAGCATTCTCTGACAACCCAAGAAACAGGCAATAAAGACACGACCTA
TCAAACGTCAGTTCCTCTCAGGGGTAAGGAGAAGCTGACCTGCATTTAGC
CCACTGCTGTTACTTTGTCTTTGCTATAAAGACCCTCAAGCTCGTATACT
CAGTCACCATTACATGAGGAACAGACTATGAACACTACAGACCTATGTGG
AGCTGAAGAGACGGCTCAGCACTTACCAACACTTACTGCTTTTGCAGAGG
AGCTAAGTTTGTTTCTTGGCACCCATGTGGCAGCCACTA
ATTGATCGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTATGAACTTGTCACAAGTCATCTGAG
AGGAGGGAGCCTCAATTGAGAAATGCCTCCAGAAGAGGGGTCTGTAGGGC
ATTTTCTTAATTAGTGATTGATGTGGGAGGGCCCAGCCCTTTGTGGGTGA
GGTCATCCCTGGTCTGGTAGTCCTGGGTGCTATAAAACACACACACACAC
ACATACACACACACGCACACACACACACACACACACATACACAAGGAGGC
TGAGCAAGCTACAGGGCATAAGTCAATAAGAAGCACCCCTCCATGTTCTT
TAGCTCCTGCCTCCAGGTTCCTGCCCCGTTTGAGTTCCTGTCCGGACTTC
CTTCAATGATGGACTATGATGTGCAAGTATAAGCCAGATGAACCCTTTAA
CTCTTCACCTTGCTTTTTGGTCATGGTGTTTCATCACAGAAATAAAAACC
CTAACTACGACAAAGGCCAAGTCTAGCCTCATCTTGCCATGTCCCTGACT
GATTCTGTCTCTGCTATTCAGCCCGGTCTGGACAGTGAGAATGGATATTT
TTCCAGTCCTGTCACTCACGGGGCATTATACCTGGGAGGCAATAAATCCG
GCCAGTACTAGTCTAACATCGCCTCATAACAGTCTTCTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_h13.b1 MSMg01no113_h13.b1 CHROMAT_FILE:
MSMg01no113_h13.b1 PHD_FILE: MSMg01no113_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:54 2005
         (606 letters)



>mm_chr2_36013373_36014378
          Length = 1006

 Score = 1129 bits (584), Expect = 0.0
 Identities = 599/604 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtctttgagttcctccccagctcttatgtctgaaaggcacggagggtggcacacacca 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ctgtctttgagttcctctccagctcttatgtctgaaaggcacggagggtggcacacacca 668

                                                                       
Query: 61  attttatttctccaagcatctcactgttaatgttttagaggaggtatctaaaaaacttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 attttatttctccaagcatctcactgttaatgttttagaggaggtatctaaaaaacttcc 608

                                                                       
Query: 121 attccatctttaaataaccttaattctatacctatatgaggtcaaaatgtcaaactagaa 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 607 attccatctttaaataaccttaattctatacctgtatgaggtcaaaatgtcaaactagaa 548

                                                                       
Query: 181 tatccacacccaggtgtgaagaatctaaagctttaaaatggcatttctggcatagactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tatccacacccaggtgtgaagaatctaaagctttaaaatggcatttctggcatagactct 488

                                                                       
Query: 241 caggttggaaagggagctgtgatataaccaagcaccagttgttgactgtgaacaagtggc 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 487 caggttggaaagggagctgtgatataaccaagcaccagctgttgactgtgaacaagtggc 428

                                                                       
Query: 301 ctacagggtaaagccaaatcctttagaacagacagcattctctgacaacccaagaaacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctacagggtaaagccaaatcctttagaacagacagcattctctgacaacccaagaaacag 368

                                                                       
Query: 361 gcaataaagacacgacctatcaaacgtcagttcctctcaggggtaaggagaagctgacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 367 gcaataaagacacgacctatcaaacgtcagttcctctcaggggtaaggagaagctgaact 308

                                                                       
Query: 421 gcatttagcccactgctgttactttgtctttgctataaagaccctcaagctcgtatactc 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gcacttagcccactgctgttactttgtctttgctataaagaccctcaagctcgtatactc 248

                                                                       
Query: 481 agtcaccattacatgaggaacagactatgaacactacagacctatgtggagctgaagaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agtcaccattacatgaggaacagactatgaacactacagacctatgtggagctgaagaga 188

                                                                       
Query: 541 cggctcagcacttaccaacacttactgcttttgcagaggagctaagtttgtttcttggca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cggctcagcacttaccaacacttactgcttttgcagaggagctaagtttgtttcttggca 128

               
Query: 601 ccca 604
           ||||
Sbjct: 127 ccca 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)