Query= MSMg01no114_n02.b1 MSMg01no114_n02.b1 CHROMAT_FILE:
MSMg01no114_n02.b1 PHD_FILE: MSMg01no114_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:36 2005
(669 letters)
>mm_chr2_84153720_84154784
Length = 1065
Score = 1247 bits (645), Expect = 0.0
Identities = 657/663 (99%), Gaps = 4/663 (0%)
Strand = Plus / Minus
Query: 7 attctagaatcattctagtcttctggattaatgtatacctttttatgcagccatgccatt 66
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 1065 attctagaatcattctagtcttctggattaatgtataccttttaatgcaggcatgccatt 1006
Query: 67 taaacctaagtgaatactttatgaaagaaaaagaagccaagtgtggtggtgcatatctat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 taaacctaagtgaatactttatgaaagaaaaagaagccaagtgtggtggtgcatatctat 946
Query: 127 aacccatgcactctggagacagaagcaggaggttcaaaagttcaagtacaaacaaggctg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 aacccatgcactctggagacagaagcaggaggttcaaaagttcaagtacaaacaaggctg 886
Query: 187 tataagaccacatctcaaaaggaggctatttgactgaatataggaagccctaaaatatga 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tataagaccacatctcaaaaggaggctatttgactgaatataggaagccctaaaatatga 826
Query: 247 aaaaatatgaggagacaaaactaacatatattagatgaagggaaatttgaaaaaccaaaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 aaaaatatgaggagacaaaactaacatatattagatgaagggaaatttgaaaaaccaaaa 766
Query: 307 tatattctcaggatactggacatcttctagaggtcagtgtgtagctacactgctaaataa 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tatattctcaggatactggacatcttctagaggtcagtgtgtagctacactgctaaataa 706
Query: 367 atagaaaaattaacaaacaatcaactaggtttagggaaattagttgtctggccaaactta 426
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 atagaaaaattaacaa----tcaactaggtttagggaaattagttgtctggccaaactta 650
Query: 427 actacagacatgaagaatgtaagaatcttgactacaaagcccctttgatttctcaaatga 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 actacagacatgaagaatgtaagaatcttgactacaaagcccctttgatttctcaaatga 590
Query: 487 tagcacctaaatcatctcactgttaaacttgttatttttatttgcacatgcatttcttaa 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tagcacctaaatcatctcactgttaaacttgttatttttatttgcacatgcatttcttaa 530
Query: 547 ggacaaaaacaggattaggagatgactgaaggacagttgagtccaatgctaatgttttag 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggacaaaaacaggattaggagatgactgaaggacagttgagtccaatgctaatgttttag 470
Query: 607 ttttccttctgttaaaataaataaaagctttaaaaattatcatcatagctctctaaggca 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttttccttctgttaaaataaataaaagctttaaaaattatcatcatagctctctaaggca 410
Query: 667 ttc 669
|||
Sbjct: 409 ttc 407
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1065
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1055
Effective search space: 695245
Effective search space used: 695245
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_n02.g1 MSMg01no114_n02.g1 CHROMAT_FILE:
MSMg01no114_n02.g1 PHD_FILE: MSMg01no114_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:36 2005
(630 letters)
>mm_chr2_84029172_84030202
Length = 1031
Score = 1073 bits (555), Expect = 0.0
Identities = 609/627 (97%), Gaps = 1/627 (0%)
Strand = Plus / Plus
Query: 1 ttagcatctcacggatgcagagtctattaagtgggtaccaatgaggttgaagtaatcact 60
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 201 ttagcatcttacggatgcagagtctactaagtgggtaccaatgaggttgaagtaatctct 260
Query: 61 gtaattgggcacgaaaatagatggtcagaagaaatggagttctctgtttagacaggtgta 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaattgggcatgaaaatagatggtcagaagaaatggagttctctgtttagacaggtgta 320
Query: 121 gctcttgaataatttgtattcagtttgactttgttttctatagaaatctcaagtacatta 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcttgaataatttgtactcagtttgactttgttttctatagaaatctcaagtacatta 380
Query: 181 tatgtttacattatgactaaattttatcgacttaggtctcatatgtaacttttcgtggtc 240
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tatgtttacattatgattaaattttatcaacttaggtctcatatgtaacttttcgtggtc 440
Query: 241 acttttgaacaccagattcaagattaagcaagaatccaaattccgtcccagtcccaggca 300
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 441 acttttgaacaccagattcaagattaagcaagaatccaaatttcgtcacagtcccaggca 500
Query: 301 taagactgtgatgtggtttcagcttccatggtgtccaaaggcagatgttcttctattctt 360
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 taagactgtgatgtggtttcaacttccatggcgtccaaaggcagatgttcttctattctt 560
Query: 361 cagtaaaatgggtttaatcagcaaaatcaaattacttaggaagcatcaaatttataatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtaaaatgggtttaatcagcaaaatcaaattacttaggaagcatcaaatttataatca 620
Query: 421 tacaaatgaacttcaccctgtgcacaaagcattttatttcctgagaattagtgggaacat 480
|||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 621 tacaaatgaatttcaccctgtacacaaagcattttatttcctgagaattagtggaaacat 680
Query: 481 tctcagaaaaaa-ttcagatggattggtttcataaaacatgtcattttagagacttttaa 539
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 tctcagaaaaaaattcagatggattggcttcataaaacatgtcattttagagacttttaa 740
Query: 540 aaatcatatatgattaccaattatatttatataagattatagatgtcattttgatatatt 599
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaatcatatatgattataaattatatttatataagattatagatgtcattttgatatatt 800
Query: 600 tcattttaacatatggttcattaattt 626
|||||||||||||||||||||||||||
Sbjct: 801 tcattttaacatatggttcattaattt 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space: 633020
Effective search space used: 633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
