BAC Information

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BAC

Clone NameMSMg01-115C07
Chromosome2 (Build37)
Map Location 89,335,351 - 89,335,714
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242
Downstream geneOlfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115C07.T7 (MSMg01no115_c07.b1)MSMg01-115C07.TJ (MSMg01no115_c07.g1)
ACCAG326848AG326849
length7371,288
length of high quality
(start - end)
369 (38 - 406)---
definitionCHROMAT_FILE: MSMg01no115_c07.b1 PHD_FILE: MSMg01no115_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:01 2005CHROMAT_FILE: MSMg01no115_c07.g1 PHD_FILE: MSMg01no115_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
TGATTTTCAATGAAGAAGGAAATACATTTTTAATTATATGTAGAAAGTGA
TGAGACATGGTTTTTCTTTCACCAGATATAGAGTTACTCTTTAGTATGTT
TTCAGGACTCTGAACACTGAACTTCTGTTTGCCAACTCCCTACCTACAAA
GACATATACATATTGCAGTGCTCTACTTTTGTCTACTTCTGCTTCCAGTT
TCTATGTTCCGCTTTTTCATTAACTACACGATTCTAAAACTTCTAATAGT
ATAGTAGATTTGGTGACTGCTGTTGATTACATTAAGGCGTTGTAGCAAAC
TAGTTAAATGATGTTATTATAAATGAACATAGTGTGTTAGGAATGGGTCT
AGGTACGCCCCAATGGACAGGATTAAGACTCCAGAAACACTCTGGCAATC
TGAGATAGATAAACTACATATATAAAACACCAGTGTAGTATATATTAATG
TAGTTACAAGACACAGTTTAAAGTCCTCCTTTTAAATTTATTGTGAAGAC
TGTAAAGGCGGCATGCTTCTATGAAGCGCATACCGATGCCCCCGTAATGC
TACAGAGCCCATCATCCGGCTGATCTTTGATATCCCAGATGATCGCCTCT
ATTATGCTTCTCATCACAATAACCCCCCTTTAGCCCTCGCCTCTACCCCC
GTCTTGCTACACCTCCATTTTCATACTACTCTTTTTT
TTTTTTCATTCTCCGATATGCGGCATCGGCGTAAGGTGGCGGAGAGGAGG
GTGGGTTCGGCGTCGCCGCGTACAGNGCGCGCGCGGAGCCGTAATAATTA
CNAGGAGATACGACGTCGACACCCTAAATGTTAGTAATACATATCCTCCC
TATAAACACCTACTAACACCACACAATACTAACACACAATCCCCCTACAC
CTCTCTTTCTAACTCACACTACACATATCACAATTACACACTATACTACT
CCTCCTTNCTCTCTGTCCTCTCGCGCTTCTTCTCTCCCCNTTCTCCTCTC
CGCCCGCCCTACCACTTTTCATCTTATATCTCTCTTNATTTACTAATCTG
TTCCTCCCCCNCGGCGCCCTCNTTNCTGCGGCCGCTCGTCTTTCTTTCTC
CTTATTAATCTGAAATATGTGCCGGTCCCGCGCGCGTGCGCGTGATTGTG
CCAGTCGTATCCGCGCGGGTTCGCGCGTTCTTCCCGATACAAAATTTCTT
GTATCTGAATATGTTCTATATATACTAATTAGTATATATTTTTTNTATGT
GTTGCANACGCCGACGCTTCGCGAGTGGCGCACTTACTATGGNGATATTT
CTACGTATTCTACTTCGTACGTCGCGCCCGCCCTATCTNCTATATTCATC
TCCATTATCTCACCTAATAATTTCGCTCTTAGCGCGCAGCTNGCCTCTGC
ATCCACAAATTTATATTATATCTTTATTATTCCTATATGCCAATACAGCA
CTACTTATAAAGCAATCGCCGTGACGGTAGCTGGACTGGGCCGATTGTGC
GCGGGGGTGTGGTGCGGNGGACCGCTTGTTCGTGTTATTAGTTATNCTTG
GCGCGTTGTACGCTAGCGCGTCCCGCCGCATATATCATACGACCAAGACG
ATGTAAACGCGAGTAATATGCAGAGTGATAAAGAGGAGTTGGCGGGAGAG
AGACGAAGATATATGAGGGTTGCGAGGNACGCGAAGACAGGCAGGGCGGC
ACACGCACTACTATAGCATATATTGCGCGATAATTATCGTATTGCNACGN
CAGGACAGCGTAGGGTTAGAAGATGTCAGTTACACCGTCGGTAGATATGT
AATCGCTGCGACGTGTGTAAATGTGTGCGCCTTCATTGTGTGTATTACAT
CACTCGCGTGCAGCNTGTATATTATACTATATCAGTATTCCCGCGCAGCG
TGTGAATGTCCGCGTTGCGATATACGCGAGGGCAGAGATTGTAGATGTAA
ATATATGGCGTGTATATGTACGCTACACGATATGTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_c07.b1 MSMg01no115_c07.b1 CHROMAT_FILE:
MSMg01no115_c07.b1 PHD_FILE: MSMg01no115_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:01 2005
         (369 letters)



>mm_chr2_89335147_89335915
          Length = 769

 Score =  634 bits (328), Expect = 0.0
 Identities = 355/364 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttgattttcaatgaagaaggaaatacatttttaattatatgtagaaagtgat 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 568 gaattcttttgattttcaatgaagaaggaaatacatttttaattatatttagaaagtgat 509

                                                                       
Query: 65  gagacatggtttttctttcaccagatatagagttactctttagtatgttttcaggactct 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 508 gagacatggtttttctttcaccagatatagagttactctttagtaagttttcaggactct 449

                                                                       
Query: 125 gaacactgaacttctgtttgccaactccctacctacaaagacatatacatattgcagtgc 184
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 448 gaacactgaacttctgtttgccaactccctacctacagagacatatacatattgcaatgc 389

                                                                       
Query: 185 tctacttttgtctacttctgcttccagtttctatgttccgctttttcattaactacacga 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 388 tctacttttgtctacttctgcttccactttctatgttccgctttttcattaactacacga 329

                                                                       
Query: 245 ttctaaaacttctaatagtatagtagatttggtgactgctgttgattacattaaggcgtt 304
           |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct: 328 ttctaaaacttctaatagtatagtagatttggtgactgttgttggttacattaaggggtt 269

                                                                       
Query: 305 gtagcaaactagttaaatgatgttattataaatgaacatagtgtgttaggaatgggtcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 268 gtagcaaactagttaaatgatgttattataaatgaacatagtgtgttaggaatggttcta 209

               
Query: 365 ggta 368
           ||||
Sbjct: 208 ggta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)