BAC Information

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BAC

Clone NameMSMg01-115I16
Chromosome2 (Build37)
Map Location 67,005,653 - 67,005,857
singlet/doubletsinglet
Overlap genenone
Upstream geneTtc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540
Downstream geneGm1322, Cmya3, LOC621171, LOC227995, B3galt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115I16.T7 (MSMg01no115_i16.b1)MSMg01-115I16.TJ (MSMg01no115_i16.g1)
ACCAG327148AG327149
length737721
length of high quality
(start - end)
613 (40 - 652)496 (80 - 575)
definitionCHROMAT_FILE: MSMg01no115_i16.b1 PHD_FILE: MSMg01no115_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:30 2005CHROMAT_FILE: MSMg01no115_i16.g1 PHD_FILE: MSMg01no115_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATG
CTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTG
TTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTG
CATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGT
GTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATCGATA
TTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTG
TGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAG
TACCTCCCACTTCTATCTTGTGAAATAGTTTGTGCAGAACTGGAATTATA
TCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGG
GCTTTTTTTGGCTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGGG
ATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTTTGGTACC
TGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGT
TGAGTATAAGCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTCAG
GATCTGCTTGTATGTCCCCCTTTTCATTTCTGATATT
NNNNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTGTATCTAGGTCTTTA
AATGAGTGCCGTAAACATGAAATCTTTGTGGGTAGAGAGGGTGGAAAACA
CTGTGCCAAATGAAATAAATAAGTTTAGTATGCCTTTTCACTTTCTAAAC
ATCTAAACTCAAATTGTAAAAATAGTCTTCTCTGCTTATATCTGAAATGG
AGTATCTTACTAATAATATGCCCCATTTTATGGCTTATCATTAACAAATA
AATCCATCAATCTAAGACCCGATGAAGGAATGTTGTTCATCTTTTACCAT
TTCTAAGTCAACAAAAGAACACAATTTCTTGCCTATACTTTTGTTTGGAT
GCCATTCTTAGTTGGGTAACCCTCCCACCAAGGCAACATGATAAAGACTT
CACTGGAAGACTGTGGAGTTATTGGGAGATAGTATATAGAGATGCAGTAA
ATTGAGAAGACGTTGAATTACTGGGCATATGCCTCCAAAAGAGATACTGT
CACCTCCCTTACTTGATTCCTGTAAGCCATGTTACCATATTTAAATTGAC
TGATACATGCTCTAATGTGAGAACATGTACCTTCCAAATGTATAAACATA
ATCAGTCCCTACTACTCACATACCCAACTTCCCTGAAGTCTATTCTTCCT
TTCTTGTACTTCCGTACTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_i16.g1 MSMg01no115_i16.g1 CHROMAT_FILE:
MSMg01no115_i16.g1 PHD_FILE: MSMg01no115_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:31 2005
         (496 letters)



>mm_chr2_67005453_67006348
          Length = 896

 Score =  389 bits (201), Expect = e-112
 Identities = 204/205 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctattgtatctaggtctttaaatgagtgccgtaaacatgaaatctttgtgggtagagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tctattgtatctaggtctttaaatgagtgccgtaaacatgaaatctttgtgggtagagag 346

                                                                       
Query: 61  ggtggaaaacactgtgccaaatgaaataaataagtttagtatgccttttcactttctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ggtggaaaacactgtgccaaatgaaataaataagtttagtatgccttttcactttctaaa 286

                                                                       
Query: 121 catctaaactcaaattgtaaaaatagtcttctctgcttatatctgaaatggagtatctta 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 285 catctaaactcaaattgtaaaattagtcttctctgcttatatctgaaatggagtatctta 226

                                    
Query: 181 ctaataatatgccccattttatggc 205
           |||||||||||||||||||||||||
Sbjct: 225 ctaataatatgccccattttatggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)