BAC Information

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BAC

Clone NameMSMg01-115J21
Chromosome2 (Build37)
Map Location 35,793,305 - 35,793,838
singlet/doubletsinglet
Overlap geneTtll11
Upstream geneTraf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip
Downstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115J21.T7 (MSMg01no115_j21.b1)MSMg01-115J21.TJ (MSMg01no115_j21.g1)
ACCAG327202AG327203
length725814
length of high quality
(start - end)
538 (36 - 573)37 (86 - 122)
definitionCHROMAT_FILE: MSMg01no115_j21.b1 PHD_FILE: MSMg01no115_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:36 2005CHROMAT_FILE: MSMg01no115_j21.g1 PHD_FILE: MSMg01no115_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAA
AAAGAGCAGGGAATACTAAATGGTACTAGAAATGCCAAACATAAAACTAC
CTGAGATGCCTTCAAAGCAGAGCAGAAAGGAAAATGTATTGTGCTATGGT
TTCAGCTGGGAGGAAATGAGGGTCTGCCTCAAAGCATGGTGGGAAGAGAG
AAAGCATTCTGTTTGACACGTGTGAGCCATTGTCACAGACTTGGCAGAAA
TAAAGCTACTCTGAAGAGATGCTCAGCTCTCACCATCTAACTGGCTAGTG
ACACAATGAACCCTGGAAGTCGTATCCTGGGGGGAGGAAAAGAACCAGGC
AGAGGAGAAACCTGCCTCTCAGAAAGAGATCTCACATAGCTCTAACAGCT
TATAGACCACCCATGCAGAATGACAGGAAGCACAGACTGAGACAGGTCAG
TGTGAGTGGGACGACACTTGGGCAGGGCTACTTACCTGTGTGCAACCTTG
ACTCTCTACTTAAATTCTGATCTCACCTGAGGAATCTTTGAGGGCTTTTC
TGGATCTCTGTCCCTCCTCCAGTGGGGCCACACTGACTAAATTCCTTTCA
TTTTTTTTTTCTGCTTTCAATGTTTAATTTGGCTCTTTTAATTGACTTAT
TGAGGAGAGGTGGACAGGCTTGACCTGGAGCACAAGGTGCGTGGTAACAC
ATGGTATGAGCCTAGTACTACAGTT
CCCTTCCCAACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTGCATGGTGAT
TTTTTTTTTTTTTTTTTTTTNTANCCNNNNCCCCCNAACTCGTCTCCTTT
TATCTCTTCTACTTCTCTCTCTCTAATACATCCTTTTCCCCTTCCTCTAA
TCTTCCCATCCCCTCAGTGCCTCCCATTCTCTTACTATCACTTCACTTAC
CACCCAAACTTCTACATCCTTTCAACCTATATCGCATGCGTCTCCGTTTC
CGTCGTCGTTTCTTTCCAAACCCCAACCACCGAACAGCCTTTTTGTCTTC
CCTGCTACCCATACCTTTACGCTCTCCATCCCACGCGAGCTAACTCTCCT
CCCCCCTGTATCATATGAGATATCAAACTCGTTGAGGTGGGGGGGGCGGA
CCAGCGGGGGAGGTATGAAAAAATTGTCTCTATTCCGTATATTCGCGTTC
GCCCTGTCTTCTATATCTTTATTTCCCGCGATTTGCGCGCAGCCAACTAT
CCTCTCCCCCCTTTGCCCCTTACCTCTATTTTATTCCCCTTATACATTAT
TTAGCGCCTCCGCGGTCGCGATCGCACCTATCATCTTTTTGGGGTTGGGC
GAGACGGCCGGTCCGGTACGATCTGCCTGATCCACCGCGCATATCGCTCC
TATATCCCCCGTTTTATCCCGGGCGCGTTACCCCAGAGAGCACTTATCTA
TAACTTAATACATAACTCGCGCCCACGCCCGCCAATATACCCTTCCTTTT
TTACTCCTCTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_j21.b1 MSMg01no115_j21.b1 CHROMAT_FILE:
MSMg01no115_j21.b1 PHD_FILE: MSMg01no115_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:36 2005
         (538 letters)



>mm_chr2_35793101_35794038
          Length = 938

 Score =  996 bits (515), Expect = 0.0
 Identities = 530/535 (99%), Gaps = 2/535 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaaaaaagagcagggaatactaaatggtactagaaatgccaaacataaaacta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaaaaaagagcagggaatactaaatggtactagaaatgccaaacataaaacta 264

                                                                       
Query: 65  cctgagatgccttcaaagcagagcagaaaggaaaatgtattgtgctatggtttcagctgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgagatgccttcaaagcagagcagaaaggaaaatgtattgtgctatggtttcagctgg 324

                                                                       
Query: 125 gaggaaatgagggtctgcctcaaagcatggtgggaagagagaaagcattctgtttgacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaggaaatgagggtctgcctcaaagcatggtgggaagagagaaagcattctgtttgacac 384

                                                                       
Query: 185 gtgtgagccattgtcacagacttggcagaaataaagctactctgaagagatgctcagctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtgagccattgtcacagacttggcagaaataaagctactctgaagagatgctcagctc 444

                                                                       
Query: 245 tcaccatctaactggctagtgacacaatgaaccctggaagtcgtatcctgggggg-agga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 tcaccatctaactggctagtgacacaatgaaccctggaagtcgtatcctgggggggagga 504

                                                                       
Query: 304 aaagaaccaggcagaggagaaacctgcctctcagaaagagatctcacatagctctaacag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagaaccaggcagaggagaaacctgcctctcagaaagagatctcacatagctctaacag 564

                                                                       
Query: 364 cttatagaccacccatgcagaatgacaggaagcacagactgagacaggtcagtgtgagtg 423
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttatagaccagc-atgcagaatgacaggaagcacagactgagacaggtcagtgtgagtg 623

                                                                       
Query: 424 ggacgacacttgggcagggctacttacctgtgtgcaaccttgactctctacttaaattct 483
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggacgacacttgggcggggctacttacctgtgtgcaaccttgactctctacttaaattct 683

                                                                  
Query: 484 gatctcacctgaggaatctttgagggcttttctggatctctgtccctcctccagt 538
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 684 gatctcacctgaggaatatttgagggcttttctggatctctgtccctcctccagt 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)