Query= MSMg01no115_m03.b1 MSMg01no115_m03.b1 CHROMAT_FILE:
MSMg01no115_m03.b1 PHD_FILE: MSMg01no115_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:47 2005
(502 letters)
>mm_chr7_123947253_123948154
Length = 902
Score = 344 bits (178), Expect = 7e-99
Identities = 434/542 (80%), Gaps = 65/542 (11%)
Strand = Plus / Plus
Query: 4 ggaattcttccaccttgtagccaactgcaaagttacttt-aggtcacac-gggacttcaa 61
|||||||||| ||||||||||||||| ||||| || | || ||| || |||||||| |
Sbjct: 200 ggaattcttctgtcttgtagccaactgcgaagttgctctgag-tca-accgggacttcga 257
Query: 62 ggtctcaaaattcatctggtagct-agccagccaaccctcatagccaagcaccatagtgc 120
|||||| ||||||||||||||| | |||||||||||| |||||||||||||||| || |
Sbjct: 258 ggtctctaaattcatctggtag-tcagccagccaaccttcatagccaagcaccagag--c 314
Query: 121 -c-ccggactgagggccca-------ca---tc----acagccaaggttgataagctccc 164
| ||||| |||| ||||| || || |||||| ||||||||| ||||
Sbjct: 315 actccggattgagagcccagcgatgtcaaagtccaccacagcccaggttgatatgctc-- 372
Query: 165 tcttgtaccctgtcttgattttagcaattcccttctcctcctcagtgttaggtgagaaag 224
||||| | | ||||||||||||| |||| | || || || |||||||||||||||
Sbjct: 373 --ttgtatcat--cttgattttagca--tccc--ccccaccccaatgttaggtgagaaag 424
Query: 225 atgaatcaaaggtcagcttcagttcac--gagcaagctggtcttccacagtgatctcagt 282
|||||| ||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct: 425 atgaattgaaggtcagcttcagt-c-cttgagcaagctggtcttccacagtgatctcagt 482
Query: 283 gcccagggttttgcctctgttccacttctctgta----a------acatcagtccatctg 332
||||||||| || || ||||||||||||||||| | || |||| |||||||
Sbjct: 483 gcccagggtgctgtctgtgttccacttctctgtatgttagcccatac-tcagcccatctg 541
Query: 333 tacttggtttccaggctgctgttcactttgatggcttc-ct-tcttggcagagcctgagc 390
|||||||||||||| ||| ||||| |||| ||| || || | ||||||||| ||||||
Sbjct: 542 tacttggtttccagattgccgttcagtttggtgg--tctctgtgttggcagagtctgagc 599
Query: 391 tggtaaataccaatccatctct--gactttgttttcaaatcaagtctt-attaagccaaa 447
|||||||| ||| |||| ||| ||||||||||||||||||||| || |||||||||||
Sbjct: 600 tggtaaatttcaacccat-tcttggactttgttttcaaatcaagt-ttcattaagccaaa 657
Query: 448 ------gcc-ttggtgaagacatccctgacagacttgcccagatcagcgtatatgggagg 500
||| ||||||||||||||||||||| ||||||| |||| || |||| | |||||
Sbjct: 658 actgtagcccttggtgaagacatccctgacatacttgccaagattagtgtatgtaggagg 717
Query: 501 ca 502
||
Sbjct: 718 ca 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_m03.g1 MSMg01no115_m03.g1 CHROMAT_FILE:
MSMg01no115_m03.g1 PHD_FILE: MSMg01no115_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:47 2005
(632 letters)
>mm_chr2_88368631_88369662
Length = 1032
Score = 1180 bits (610), Expect = 0.0
Identities = 625/630 (99%), Gaps = 1/630 (0%)
Strand = Plus / Plus
Query: 1 caaattccagagatattaaataagactttcattcaaaacttaaatgttcaatttaaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 caaattccagagatattaaataagactttcattcaaaacttaaatgttcaatttaaatgt 259
Query: 61 accaattccaactgcaatatgttgactgtcacaaaaaaaaaaatgtggaatgtcctaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 accaattccaactgcaatatgttgactgtcacaaaaaaaaaaatgtggaatgtcctaaaa 319
Query: 121 gatattcatctgggcaggtctgtgtgggatgatccagcttatgttgattaggtaggtaga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 320 gatattcatctgggcaggtctgtgtgggatgatccagcttatgttgattaggcaggtaga 379
Query: 181 caccccttagctgtagatatttcaactccatggcatgggg-tcttgtggactgaagaaaa 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 380 caccccttagctgtagatatttcaactccatggcatgggggtcttgtggactgaagaaaa 439
Query: 240 agaggaagattttgatttttctgtctttgattcctgactgtggatgcaatcttcttagtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaggaagattttgatttttctgtctttgattcctgactgtggatgcaatcttcttagtt 499
Query: 300 gccctaggctattgccatcatgactctcttgctatatgaggaccataccatcaacctgga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gccctaggctattgccatcatgactctcttgctatatgaggaccataccatcaacctgga 559
Query: 360 ggacagaataaaccattgtgtcttcagcttaatctatgagattttccataataatatgaa 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 ggacagaataaaccattgtgtcttcaacttaatctatgagattttccataataatatgaa 619
Query: 420 tgatattaataatatgaactaataaaaaccattgcttttttcctatagcatagttctata 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttatattaataatatgaactaataaaaaccattgcttttttcctatagcatagttctata 679
Query: 480 acaaatgaatacaccaactaactagttatttcaaaacagctggtagaaaaatttaagagt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acaaatgaatacaccaactaactagttatttcaaaacagctggtagaaaaatttaagagt 739
Query: 540 gctatcaatacaaggaagttatagctgcttgaggattaggaatatgcccatttccctgtt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gctatcaatacaaggaagttatagctgcttgaggattaggaatatgcccatttccctgtt 799
Query: 600 ctggtcattacacatatttaaaacatattt 629
|||||||||||||||| |||||||||||||
Sbjct: 800 ctggtcattacacatacttaaaacatattt 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
