BAC Information

Click to search

BAC

Clone NameMSMg01-115N15
Chromosome2 (Build37)
Map Location 84,757,678 - 84,757,908
singlet/doubletsinglet
Overlap genenone
Upstream geneZswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2
Downstream geneSlc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115N15.T7 (MSMg01no115_n15.b1)MSMg01-115N15.TJ (MSMg01no115_n15.g1)
ACCAG327378AG327379
length755727
length of high quality
(start - end)
482 (36 - 517)232 (81 - 312)
definitionCHROMAT_FILE: MSMg01no115_n15.b1 PHD_FILE: MSMg01no115_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:55 2005CHROMAT_FILE: MSMg01no115_n15.g1 PHD_FILE: MSMg01no115_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGAGGAATACCGAATGGCTGAGAAACACTTGAAAAAATGTTCAGCATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA
CCAGTCAGAATGGCTAAGATCAAAATTTCAGGTGACAGCAGAGGATGTGG
AGAAAGAGGAACACTCTCCACTGTTGGTGGGATTGCAAGCTTGTACAACA
ACTCTGGAAATCAGTCCGGCGGTTTCTCAGAAAATTGGACATAGTACTAC
CAGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAAAAGATGTTACA
ACTTAAGAAAGAAACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCACACCCTGGAAAGAACCCAGATGCCCCTCAACAAAGGAATGGATA
CAAAAAATGTGGTACATTTACACCATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGGCCAATGCTTGGACCTGGACGGCATTA
TCCTGAGTGAGGCCACCCAACCACCAAAGAACTTATACGATATGTACTCC
CTGGCCAGCGCCCTTCTACCCCTCAACCTTAATATATCCTTCATCCACCC
TCCCTCTCCGCCCTTATCCCGCCCCTCCCCTACTCCCCCCCTCACCACCC
GCGCCAAACCCCTCCTTTCCTTCCCTAATTTTCGCCCCCCTCTTCCCCGC
GTCCC
TTTTTTCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGATTCACACTGGGGTG
GGTGCTACCATGACCCTCAACTTAGGTCATGTGTCCCTGGCATATACACT
GCAGACCCATGGTTCAAACATGGACAGTTTGGCTCCCAGCACCATGTTGT
CCATCTTCAAGACTCCACCATAGGGGGCTAGGGTGATAATGTGGATGCAC
AGGCTCCTGACAAAGCAGCAGGACTAATATGGTGGGCAGTTGTTCCCTCC
TCCTCCTCCTCTTCCTTCTCCTTTCTTTTTTTTCCCTCCCCTCTTCTCCC
TTCCCCTTTAATCTTTTTTTTCCCCCCTTTTCTCCTTCTCTTTCCTTCTC
CTTTCTCCTCATTTTCCCCCCCCCCCGTGCAGTTTCCCCCACCTTCTTCT
ATCTCTTTTCCTCTTTCCCCTCCTATTTTTCTCTTCCTCCTTTCCCTTTA
TCCTCCTATCCCCCTCCCTCCCCTCTTCATCCTTTTTTCTCCCTTTCCCC
TCTTTCTTTCCGTTCCCTTTTTTTTCCTCCTCCCTTCTTCCTTCTTCCCT
TTCCCTTTTTCTCTTTCCTTTTTCTCTCCCCCCCTTTTTTTCCCCCCTTC
TTCCTTATTCCCCTTCCCCTTCCTTCTTCTTCTCCCCTTCCTTCTCTTTT
CTCTCCCCCCCTCCTTTCCTTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_n15.g1 MSMg01no115_n15.g1 CHROMAT_FILE:
MSMg01no115_n15.g1 PHD_FILE: MSMg01no115_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:55 2005
         (232 letters)



>mm_chr2_84757478_84758109
          Length = 632

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgattcacactggggtgggtgctaccatgaccctcaacttaggtcatgtgtccctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tcttgattcacactggggtgggtgctaccatgaccctcaacttaggtaatgtgtccctgg 260

                                                                       
Query: 61  catatacactgcagacccatggttcaaacatggacagtttggctcccagcaccatgttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catatacactgcagacccatggttcaaacatggacagtttggctcccagcaccatgttgt 320

                                                                       
Query: 121 ccatcttcaagactccaccatagggggctagggtgataatgtggatgcacaggctcctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatcttcaagactccaccatagggggctagggtgataatgtggatgcacaggctcctga 380

                                                              
Query: 181 caaagcagcaggactaatatggtgggcagttgttccctcctcctcctcctc 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagcagcaggactaatatggtgggcagttgttccctcctcctcctcctc 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)