BAC Information

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BAC

Clone NameMSMg01-115P09
Chromosome2 (Build37)
Map Location 144,896,053 - 144,896,614
singlet/doubletsinglet
Overlap genenone
Upstream gene4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115P09.T7 (MSMg01no115_p09.b1)MSMg01-115P09.TJ (MSMg01no115_p09.g1)
ACCAG327461AG327462
length734769
length of high quality
(start - end)
557 (38 - 594)162 (83 - 244)
definitionCHROMAT_FILE: MSMg01no115_p09.b1 PHD_FILE: MSMg01no115_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:03 2005CHROMAT_FILE: MSMg01no115_p09.g1 PHD_FILE: MSMg01no115_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATA
AACGAATGCTGTTTTCTTTCCTTTTCCCAATAGCTCTCAACGAGAAGGGT
GCTGTGTGAGGAAAGCATCAATACAACTTCTGTCTTTCTCTTGGCTTCAG
CCAGTAATAAATATGACAACTACTTGGTGGCATAGACTGTCCCATAATAG
TGGGAACAGTACTCTGTTCTCATGGGAACACATAGTTATGGCAGGCAAGA
ATCTATCTTCCTTTTTTGGCAACATAGCTTCCAGAACTTGATTTAGGAAA
TTTGTTGTCCATGGCATAGTTTCATCTACAATGTTATTTGTACATATAAT
GTATATTTTATTGCAGATATGTCAATGCTCACCCACAGAGGATGTGTGGC
CTCTTCTCTGGCTTTTCAACATACTCTATCAGCAAGATGCTAACTTGTTA
CACATTGAAAGGATGCTCAGAGGTGTACCAGCAGTTAGGATCCTACATTA
TATAAAATCATGGTGATGTTCTCCATGAACTAATTTAAAATACCATTTAA
ATATGATGTTCCCTCTGTCACAGCCAGGATGGAAAAAATTTCCCATCTCA
CTGTTACTCTTCATAACCCACTTGGAAAACTTTTGCTTATTAGCACCATG
TTCATAGCCTTTCCGGGTTCACAAGCCCCCAAGGACGAATGATTTCCTCC
GAACAGCTTTCTCGTCCCCGCTTGAACGCACAAG
NTTTCTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCTATTGTTATGTG
TCTGGTTTCTCATCCTCATGACCAGATGAAGGTGATGTGTTTTTGGAAGG
AATGAACAGAGAAGTAACTGATGGTGACATTACATTGTATCAAGGGTGTT
ACTTACCACCTCAACCAAGACCCTTGGGGGTGGGGATAAAGAAGTGTCTT
ATGACTCTCTCTCTGGCAGTTTGTCATGTTCCACATAGCGACCCTTCTCT
TCGCTGTCTTCGCTCAAACCCCCATATTTTTTTTTCCCGATCAACTGATC
CACTTATTCTCTTTTTCTCTCCCCCCCTCCCCCTATTGTTCTGCGCTTTG
TTTTTTTTGTCTGTGAAAATTTGTCCCCCCCCCTCTTTTAAGAATAATTT
TTTTTTTTTCTCTCTCTTATGACAGACTCCTATTCCTCTCCCTTTCTTCT
CTCTTTTCCCCCTCTCTTCCTTCTCCCTTTTCCTATCTCTATTCATTTTT
TCCCCTTTACCCTTTCTTTTTCATTTTTTTTCTCTATTTCCCTTTTTTAT
ATTCCTTTCTTACTTATCCCATTTCCATCACACCTCTTTCTTCTTCCATT
CCTCACATTTTTCCCTTCTTCTCATCCCTGAATATCCCTTCCCTCCCTTT
TTTTTTTTTTTCCCCTATTTTCTCCTTCTTTTTCGCCGTTCACCTTTCTT
CCCTAACTCCTCTCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_p09.b1 MSMg01no115_p09.b1 CHROMAT_FILE:
MSMg01no115_p09.b1 PHD_FILE: MSMg01no115_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:03 2005
         (557 letters)



>mm_chr2_144895762_144896718
          Length = 957

 Score = 1033 bits (534), Expect = 0.0
 Identities = 551/562 (98%), Gaps = 9/562 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataaacgaatgctgttttctttccttttcccaatagctctcaacgagaagggtg 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 853 gaattcataaacgaatgctgttttctttcctttttccaatagctctcaacgagaagggtg 794

                                                                       
Query: 65  ctgtgtgaggaaagcatcaatacaact---------tctgtctttctcttggcttcagcc 115
           |||||||||||||||||||||||||||         ||||||||||||||||||||||||
Sbjct: 793 ctgtgtgaggaaagcatcaatacaacttctttaccctctgtctttctcttggcttcagcc 734

                                                                       
Query: 116 agtaataaatatgacaactacttggtggcatagactgtcccataatagtgggaacagtac 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agtaataaatatgacaactacttggtggcatagactgtcccataatagtgggaacagtac 674

                                                                       
Query: 176 tctgttctcatgggaacacatagttatggcaggcaagaatctatcttccttttttggcaa 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tctgttctcatgggaacacatagttatggcaggcaagaatctatcttccttttttggcaa 614

                                                                       
Query: 236 catagcttccagaacttgatttaggaaatttgttgtccatggcatagtttcatctacaat 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 catagcttccagaacttgatttaggaaatttgttgtccatggcatagtttcatctacaat 554

                                                                       
Query: 296 gttatttgtacatataatgtatattttattgcagatatgtcaatgctcacccacagagga 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gttatttgtacatataatgtatattttattgcagatatgtcaatgctcacccacagagga 494

                                                                       
Query: 356 tgtgtggcctcttctctggcttttcaacatactctatcagcaagatgctaacttgttaca 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgtgtggcctcttctctggcttttcaacatactctatcagcaagatgctaacttgttaca 434

                                                                       
Query: 416 cattgaaaggatgctcagaggtgtaccagcagttaggatcctacattatataaaatcatg 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cattgaaaggatgctcagaggtgtaccagcagttaggatcctacattatataaaatcatg 374

                                                                       
Query: 476 gtgatgttctccatgaactaatttaaaataccatttaaatatgatgttccctctgtcaca 535
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 373 gtgatgttctccatgaactaatttaaaataacatttaaatatgatgttccctctgtcaca 314

                                 
Query: 536 gccaggatggaaaaaatttccc 557
           ||||||||||||||||||||||
Sbjct: 313 gccaggatggaaaaaatttccc 292


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)