Query= MSMg01no116_f08.b1 MSMg01no116_f08.b1 CHROMAT_FILE:
MSMg01no116_f08.b1 PHD_FILE: MSMg01no116_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:33 2005
(532 letters)
>mm_chr2_94114053_94114984
Length = 932
Score = 812 bits (420), Expect = 0.0
Identities = 487/530 (91%), Gaps = 38/530 (7%)
Strand = Plus / Plus
Query: 5 gaattcaccaagtccc-gggtttgatccccagtgcagtaagcaggctgtggttagtgctg 63
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 239 gaattcaccaag-ccctgggtttgatccccagtgcagtaagcaggttgtggttagtgctg 297
Query: 64 taatcccagtagttgagaggcagaggctcaggagttcaaggtcgtccttattggaaacca 123
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 298 taatcccagcagttgagagg-agaggctcaggagttcaaggtcgtccttattggaaacca 356
Query: 124 gaataaaattcctgacaagactttgtcttaaaggggtcagggggcggatgctcatctcct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gaataaaattcctgacaagactttgtcttaaaggggtcagggggcggatgctcatctcct 416
Query: 184 tgggctttatacacacacacacacacacacacacacacacacacacacacacacacacac 243
||||||| |||||||||||||||||||||||||||
Sbjct: 417 tgggctt--tacacacacacacacacacacacacac------------------------ 450
Query: 244 acacacacgccctcctcccatctgtttgcactaacagcagagggccctggtggggtctta 303
|||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 451 -------cgccctcctcccatctgtttgcgctaatagcagagggccctggtggggtctta 503
Query: 304 agactggccagggttgtacaacaggtccaccttacacaaggcaatggagcagctaaacct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agactggccagggttgtacaacaggtccaccttacacaaggcaatggagcagctaaacct 563
Query: 364 agacagacacaacaatgattctctcagttctttttgttggtctcataacatgcgttcctc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agacagacacaacaatgattctctcagttctttttgttggtctcataacatgcgttcctc 623
Query: 424 ccttctggaacggtggtttagttctgccgaaacccagaagacgagctcactgcccctggt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccttctggaacggtggtttagttctgccgaaacccagaagacgagctcactgcccctggt 683
Query: 484 aactggacagcatactagatctggggaa-gggagaggcttcttagggatg 532
||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 684 tactggacagcatactagatctggggaatggg-gaggcttcttagggatg 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_f08.g1 MSMg01no116_f08.g1 CHROMAT_FILE:
MSMg01no116_f08.g1 PHD_FILE: MSMg01no116_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:33 2005
(553 letters)
>mm_chr2_94223567_94224519
Length = 953
Score = 1023 bits (529), Expect = 0.0
Identities = 545/553 (98%), Gaps = 5/553 (0%)
Strand = Plus / Minus
Query: 1 ctggatagccagagctacgtagtgagaccttgtctcaaaaacaaaacaaagaaaccaaaa 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 798 ctggatagccagagctacgtagtgagaccttgtctca-----aaaacaaagaaaccaaaa 744
Query: 61 caacaacaacaaaaagtcgttcttgtagcctctggctctgggatcctgggaaaattttgg 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 caacaacaacaaaaagttgttcttgtagcctctggctctgggatcctgggaaaattttgg 684
Query: 121 ttgtttgttcttatctggttgagggttttgcaaagaaacacacaacttttggttttagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttgtttgttcttatctggttgagggttttgcaaagaaacacacaacttttggttttagaa 624
Query: 181 tatagcaaatttaaattctagaagactttccaaaataaatggtgtgtctgttttgaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatagcaaatttaaattctagaagactttccaaaataaatggtgtgtctgttttgaaaaa 564
Query: 241 aaaaaaaataatatccaaaattttaaggaaactgaattacagaaagatgccagtttctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaaaaaaataatatccaaaattttaaggaaactgaattacagaaagatgccagtttctta 504
Query: 301 ttgggaataagcgggagtaatgagtgtagactaaagagccttcgagcagaaaggatccta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttgggaataagcgggagtaatgagtgtagactaaagagccttcgagcagaaaggatccta 444
Query: 361 aggaccatctccacttacaaggaggaaacggacctgaagactagacccacgacccgcccg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aggaccatctccacttacaaggaggaaacggacctgaagactagacccacgacccgcccg 384
Query: 421 ggctctcagactctccgggcagacatggcagaactggaggcaaagtgctcaaggcttgtt 480
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 383 ggctctcagactctcggggcagacatggcagaactggaggcaaagttctcaaggcttgtt 324
Query: 481 ctttggttttggtttgaggaggttttgttcctttctctcttactttggcttctattaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctttggttttggtttgaggaggttttgttcctttctctcttactttggcttctattaaaa 264
Query: 541 acaatatggccaa 553
|||||||||||||
Sbjct: 263 acaatatggccaa 251
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
