Query= MSMg01no117_b15.b1 MSMg01no117_b15.b1 CHROMAT_FILE:
MSMg01no117_b15.b1 PHD_FILE: MSMg01no117_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:33 2005
(597 letters)
>mm_chr2_7741769_7742765
Length = 997
Score = 683 bits (353), Expect = 0.0
Identities = 407/425 (95%), Gaps = 2/425 (0%)
Strand = Plus / Plus
Query: 1 ctcaaagtaccaaacattttgaccaatattccatttttcagagt-gaggatggatcagag 59
|||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 201 ctcaaagtaccaaacattttgaccaatattccatttttcagagttg-ggatgggtcagag 259
Query: 60 gattttgacataatcaagtgatggaatgttttaaaatggctcaccttatggtagcatcct 119
| |||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct: 260 ggctttgacataatcaagtgatgtaatgttttaaaatggctaaccttatggaagcatcct 319
Query: 120 tgggtgtttatgcttgatctctgccttttgcttcatgtgcccttccctctatctttatca 179
||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 320 tggatgtttttgcttgatctctatcttttgcttcatgtgcccttccctctatctttatca 379
Query: 180 ccagtatcattaaacaacatgtggagatttgggctctctgattagactggaaagcatggg 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccagtatcattaaagaacatgtggagatttgggctctctgattagactggaaagcatggg 439
Query: 240 ttaattcagcactcatagttactttagtttgaacaagaattgtccacttttaatagataa 299
||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 440 ttaattcagcactcagagttactttagttagaacaagatttctccacttttaatagataa 499
Query: 300 tgtttccaagagttcaagtagacaaagtttattttaaacttttaaaacttctggttaact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtttccaagagttcaagtagacaaagtttattttaaacttttaaaacttctggttaact 559
Query: 360 tattgcacctgatacatttcatttgaatttttagtattgattttcatctggaaaactagt 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 560 tattgcacctgatacatttcatttgaatttttagtattgattttcatctggataactagt 619
Query: 420 attct 424
|||||
Sbjct: 620 attct 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_b15.g1 MSMg01no117_b15.g1 CHROMAT_FILE:
MSMg01no117_b15.g1 PHD_FILE: MSMg01no117_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:33 2005
(612 letters)
>mm_chr2_7897271_7898282
Length = 1012
Score = 1079 bits (558), Expect = 0.0
Identities = 576/582 (98%)
Strand = Plus / Minus
Query: 1 atttatgcttgttggcttattaaggagaactgccatcttcccttacccagatcccaaata 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 582 atttatgcttcttggcttattaaggagaactgccatcttcccttacccagatcccaaaca 523
Query: 61 tctaacaactgcaaaacaactccgtttatgtttgaaaacgcaatacctgcaataccagtt 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tctaacatctgcaaaacaactccgtttatgtttgaaaacgcaatacctgcaataccagtt 463
Query: 121 ctttatcgctgctgtcagcctttcagcaattattattattcaaatgtgtttcccagaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctttatcgctgctgtcagcctttcagcaattattattattcaaatgtgtttcccagaggg 403
Query: 181 tcatataacatgttaaattaaaactaaagaaattcattaaaataaactaaattaaactag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcatataacatgttaaattaaaactaaagaaattcattaaaataaactaaattaaactag 343
Query: 241 caaatatcagatattacactaaaggttcacaaataatagtaattatcctttcagatcata 300
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 caaatatcagagaaaacactaaaggttcacaaataatagtaattatcctttcagatcata 283
Query: 301 atagagttaaaatatcaatatataatacaactaccactgctagaaagtcttaaaatgttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atagagttaaaatatcaatatataatacaactaccactgctagaaagtcttaaaatgttt 223
Query: 361 gaaaaccaacacatatagttctaaataaattataaagaaaaaaatcaagaaaatagaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gaaaaccaacacatatagttctaaataaattataaagaaaaaaatcaagaaaatagaaaa 163
Query: 421 tagctacaaaaataaataatcaaaactcaagaaaagagaaagcaaatataagaaatagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tagctacaaaaataaataatcaaaactcaagaaaagagaaagcaaatataagaaatagag 103
Query: 481 aaaaatagtacaaatgcaaacctttgtcttaaaatattgataaaaataataaatcctgga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 aaaaatagtacaaatgcaaacctttgtcttaaaatattgataaaaataataaatcctgga 43
Query: 541 ccagtaaggtaaagacactttgtgccaagcttaatgagacat 582
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 ccagtaaggtaaagacactttgtgccaagcttaatgagacat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
