Query= MSMg01no117_f08.b1 MSMg01no117_f08.b1 CHROMAT_FILE:
MSMg01no117_f08.b1 PHD_FILE: MSMg01no117_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:51 2005
(651 letters)
>mm_chr2_134382178_134383229
Length = 1052
Score = 1046 bits (541), Expect = 0.0
Identities = 620/647 (95%), Gaps = 7/647 (1%)
Strand = Plus / Plus
Query: 9 tccaggtaccatcgcatggcagaagacagccctttccaggtacaaagtatgttttcatga 68
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 209 tccaggtaccatgg-atggcagaagatagccctttccaggtacaaagtatgttttcatga 267
Query: 69 ctaaccatgactactccatgactactttggcatttctttttaaatgcttgtggctgttca 128
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 268 ctaaccatgactactccattactactttggcatttctttttaaattattgtggctgttca 327
Query: 129 ttctctatttttgtgaaacgtttgggccatttttcataatagatgtttttacacttgact 188
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 328 ttctctatttttgtgaaacctttgggccatttttcgtaatagatgtttttacacttgact 387
Query: 189 ggcaggcttttaaaatgcatttttgagtatagaacattttctgttatgtattttcactaa 248
|||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||
Sbjct: 388 ggcaggcttttaaaatgcatttttgaatacagaacattttctgttaggtattttcactaa 447
Query: 249 actataatttcttaag--ttttttttttaatttttgagctggatcccacattaggcctgt 306
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 actataatttcttaagatttttttttttaatttttgagctggatcccacattaggcctgt 507
Query: 307 aactgaaccttcttttcctcaagctcctctccatttccattcctgtaattctttcagaca 366
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 508 aactgaaccttcttttcctcaagctcctctccatttccattcctgtaattgtttcagaca 567
Query: 367 ggaacaattatgggtcagaggtattactgagatggcagccccatctctcacttgatgtcc 426
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 568 ggaacaattatgggtcagaggtgttactgagatggcagccccatccctcacttgatgtcc 627
Query: 427 tgtctttctgctggagatgggctctataagttccctctccttactgtggggcactccatc 486
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 628 tgtctttctgctggagatgggctctataagttccctctccctactgtggggcacttcatc 687
Query: 487 aaaggtccctccctgt-ggatcctgggagtctctcacctcccaggtctctggtgtattct 545
|||||||||||||||| || || |||||||||||||||||||| |||||||||||||||
Sbjct: 688 aaaggtccctccctgtaggttca-gggagtctctcacctcccagatctctggtgtattct 746
Query: 546 gggggcgggg-gttccccaacctcctatttcctgaggttacctgtttgcattctttcttc 604
|| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ggagg-ggggtgttccccaacctcctatttcctgaggttacctgtttgcattctttcttc 805
Query: 605 cagccctcggggcttcagttcttgtccctcacccaataccagatcag 651
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 806 cagccctcggggcttcagttcttgtccctcacccaataccaggtcag 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1052
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1042
Effective search space: 667922
Effective search space used: 667922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_f08.g1 MSMg01no117_f08.g1 CHROMAT_FILE:
MSMg01no117_f08.g1 PHD_FILE: MSMg01no117_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:51 2005
(582 letters)
>mm_chr2_134526346_134527327
Length = 982
Score = 1004 bits (519), Expect = 0.0
Identities = 569/595 (95%), Gaps = 15/595 (2%)
Strand = Plus / Minus
Query: 1 tttatttccactgtagcagtggtggctatgtagctgtggctatgtattatattttgttta 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 859 tttatttccactgtagcagtggtggctatgtacctgtggctatgtattatattttgttta 800
Query: 61 aatgcatgataatgacacaccttaaaaggataaattcgaccatatacaaataatctaata 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aatgcattataatgacacaccttaaaaggataaattcgaccatatacaaataatctaata 740
Query: 121 atatatttattttaaaattctcttctagtttaaaagctatattttccccaccctaccccc 180
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 739 atatatgtattttaaaattctcttccagtttaaaagctatattttccccaccctaccccc 680
Query: 181 caatttttataaagaaataatggctccacgctcttgttttactttctgcaacatcctgtg 240
|||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct: 679 caatttttattaagaaataatggctccacactcttgttttgcttcctgcaacatcctgtg 620
Query: 241 attctctactctcagaggcactgccagctcttctcccgagttacaggcatctgtgttgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 attctctactctcagaggcactgccagctcttctcccgagttacaggcatctgtgttgcc 560
Query: 301 tcaatgtggggtgatgactagtcgtgcttcctttaaggaggaggggcaactgctggtgca 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 559 tcaatgtggggtgatgactagtcgtgcttcctttaagaaggaggggcaactgctggtgca 500
Query: 361 gagcggactgatcattgccagcatacttaggagttcacaacagttaaaatttttgaaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gagcggactgatcattgccagcatacttaggagttcacaacagttaaaatttttgaaagg 440
Query: 421 ttttccctcactctttacagtcctttaatttttaactaacaaagatgagagcttgaaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttttccctcactctttacagtcctttaatttttaactaacaaagatgagagcttgaaaag 380
Query: 481 aaaaatcagaaaatgaatgggactcctgtaaagtggcaga---------------aaaac 525
|||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 379 aaaaatcagaaaatgaatgggactcctgtaaattggcagaaaaacaaaacaaaacaaaac 320
Query: 526 aaaacaaaacaaaacaaaacaaaacatgaaggttacatgcacacctgattgggtt 580
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 319 aaaacaaaacaaaacaaaacaaaacatgaaggttacatgcatacctgattgggtt 265
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|