BAC Information

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BAC

Clone NameMSMg01-117F08
Chromosome2 (Build37)
Map Location 134,382,386 - 134,527,204
singlet/doubletdoublet
Overlap geneTxndc13
Upstream geneBmp2, Hao1
Downstream geneLOC627897, LOC433478, Plcb1, LOC100043487, LOC100043786, LOC100043788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117F08.T7 (MSMg01no117_f08.b1)MSMg01-117F08.TJ (MSMg01no117_f08.g1)
ACCAG328493AG328494
length700705
length of high quality
(start - end)
651 (43 - 693)582 (77 - 658)
definitionCHROMAT_FILE: MSMg01no117_f08.b1 PHD_FILE: MSMg01no117_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:51 2005CHROMAT_FILE: MSMg01no117_f08.g1 PHD_FILE: MSMg01no117_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,382,386 - 134,383,029)(134,526,610 - 134,527,204)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCCAGGTACCATCGCATGGCAGAAGACAGCCCTTTCCAGGTACAAAGTAT
GTTTTCATGACTAACCATGACTACTCCATGACTACTTTGGCATTTCTTTT
TAAATGCTTGTGGCTGTTCATTCTCTATTTTTGTGAAACGTTTGGGCCAT
TTTTCATAATAGATGTTTTTACACTTGACTGGCAGGCTTTTAAAATGCAT
TTTTGAGTATAGAACATTTTCTGTTATGTATTTTCACTAAACTATAATTT
CTTAAGTTTTTTTTTTAATTTTTGAGCTGGATCCCACATTAGGCCTGTAA
CTGAACCTTCTTTTCCTCAAGCTCCTCTCCATTTCCATTCCTGTAATTCT
TTCAGACAGGAACAATTATGGGTCAGAGGTATTACTGAGATGGCAGCCCC
ATCTCTCACTTGATGTCCTGTCTTTCTGCTGGAGATGGGCTCTATAAGTT
CCCTCTCCTTACTGTGGGGCACTCCATCAAAGGTCCCTCCCTGTGGATCC
TGGGAGTCTCTCACCTCCCAGGTCTCTGGTGTATTCTGGGGGCGGGGGTT
CCCCAACCTCCTATTTCCTGAGGTTACCTGTTTGCATTCTTTCTTCCAGC
CCTCGGGGCTTCAGTTCTTGTCCCTCACCCAATACCAGATCAGTTTCCCC

NNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTCCACTGTAGCAGTGGTG
GCTATGTAGCTGTGGCTATGTATTATATTTTGTTTAAATGCATGATAATG
ACACACCTTAAAAGGATAAATTCGACCATATACAAATAATCTAATAATAT
ATTTATTTTAAAATTCTCTTCTAGTTTAAAAGCTATATTTTCCCCACCCT
ACCCCCCAATTTTTATAAAGAAATAATGGCTCCACGCTCTTGTTTTACTT
TCTGCAACATCCTGTGATTCTCTACTCTCAGAGGCACTGCCAGCTCTTCT
CCCGAGTTACAGGCATCTGTGTTGCCTCAATGTGGGGTGATGACTAGTCG
TGCTTCCTTTAAGGAGGAGGGGCAACTGCTGGTGCAGAGCGGACTGATCA
TTGCCAGCATACTTAGGAGTTCACAACAGTTAAAATTTTTGAAAGGTTTT
CCCTCACTCTTTACAGTCCTTTAATTTTTAACTAACAAAGATGAGAGCTT
GAAAAGAAAAATCAGAAAATGAATGGGACTCCTGTAAAGTGGCAGAAAAA
CAAAACAAAACAAAACAAAACAAAACATGAAGGTTACATGCACACCTGAT
TGGGTTGTATTCTTCACCTGAATCACCAGTCTTACGGTCACATGGGTGCA
AGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_f08.b1 MSMg01no117_f08.b1 CHROMAT_FILE:
MSMg01no117_f08.b1 PHD_FILE: MSMg01no117_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:51 2005
         (651 letters)



>mm_chr2_134382178_134383229
          Length = 1052

 Score = 1046 bits (541), Expect = 0.0
 Identities = 620/647 (95%), Gaps = 7/647 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   tccaggtaccatcgcatggcagaagacagccctttccaggtacaaagtatgttttcatga 68
           |||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 209 tccaggtaccatgg-atggcagaagatagccctttccaggtacaaagtatgttttcatga 267

                                                                       
Query: 69  ctaaccatgactactccatgactactttggcatttctttttaaatgcttgtggctgttca 128
           ||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||
Sbjct: 268 ctaaccatgactactccattactactttggcatttctttttaaattattgtggctgttca 327

                                                                       
Query: 129 ttctctatttttgtgaaacgtttgggccatttttcataatagatgtttttacacttgact 188
           ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 328 ttctctatttttgtgaaacctttgggccatttttcgtaatagatgtttttacacttgact 387

                                                                       
Query: 189 ggcaggcttttaaaatgcatttttgagtatagaacattttctgttatgtattttcactaa 248
           |||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||
Sbjct: 388 ggcaggcttttaaaatgcatttttgaatacagaacattttctgttaggtattttcactaa 447

                                                                       
Query: 249 actataatttcttaag--ttttttttttaatttttgagctggatcccacattaggcctgt 306
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 actataatttcttaagatttttttttttaatttttgagctggatcccacattaggcctgt 507

                                                                       
Query: 307 aactgaaccttcttttcctcaagctcctctccatttccattcctgtaattctttcagaca 366
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 508 aactgaaccttcttttcctcaagctcctctccatttccattcctgtaattgtttcagaca 567

                                                                       
Query: 367 ggaacaattatgggtcagaggtattactgagatggcagccccatctctcacttgatgtcc 426
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 568 ggaacaattatgggtcagaggtgttactgagatggcagccccatccctcacttgatgtcc 627

                                                                       
Query: 427 tgtctttctgctggagatgggctctataagttccctctccttactgtggggcactccatc 486
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 628 tgtctttctgctggagatgggctctataagttccctctccctactgtggggcacttcatc 687

                                                                       
Query: 487 aaaggtccctccctgt-ggatcctgggagtctctcacctcccaggtctctggtgtattct 545
           |||||||||||||||| || ||  |||||||||||||||||||| |||||||||||||||
Sbjct: 688 aaaggtccctccctgtaggttca-gggagtctctcacctcccagatctctggtgtattct 746

                                                                       
Query: 546 gggggcgggg-gttccccaacctcctatttcctgaggttacctgtttgcattctttcttc 604
           || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ggagg-ggggtgttccccaacctcctatttcctgaggttacctgtttgcattctttcttc 805

                                                          
Query: 605 cagccctcggggcttcagttcttgtccctcacccaataccagatcag 651
           |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 806 cagccctcggggcttcagttcttgtccctcacccaataccaggtcag 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1052
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1042
Effective search space:   667922
Effective search space used:   667922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no117_f08.g1 MSMg01no117_f08.g1 CHROMAT_FILE:
MSMg01no117_f08.g1 PHD_FILE: MSMg01no117_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:51 2005
         (582 letters)



>mm_chr2_134526346_134527327
          Length = 982

 Score = 1004 bits (519), Expect = 0.0
 Identities = 569/595 (95%), Gaps = 15/595 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatttccactgtagcagtggtggctatgtagctgtggctatgtattatattttgttta 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 859 tttatttccactgtagcagtggtggctatgtacctgtggctatgtattatattttgttta 800

                                                                       
Query: 61  aatgcatgataatgacacaccttaaaaggataaattcgaccatatacaaataatctaata 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aatgcattataatgacacaccttaaaaggataaattcgaccatatacaaataatctaata 740

                                                                       
Query: 121 atatatttattttaaaattctcttctagtttaaaagctatattttccccaccctaccccc 180
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 739 atatatgtattttaaaattctcttccagtttaaaagctatattttccccaccctaccccc 680

                                                                       
Query: 181 caatttttataaagaaataatggctccacgctcttgttttactttctgcaacatcctgtg 240
           |||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct: 679 caatttttattaagaaataatggctccacactcttgttttgcttcctgcaacatcctgtg 620

                                                                       
Query: 241 attctctactctcagaggcactgccagctcttctcccgagttacaggcatctgtgttgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 attctctactctcagaggcactgccagctcttctcccgagttacaggcatctgtgttgcc 560

                                                                       
Query: 301 tcaatgtggggtgatgactagtcgtgcttcctttaaggaggaggggcaactgctggtgca 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 559 tcaatgtggggtgatgactagtcgtgcttcctttaagaaggaggggcaactgctggtgca 500

                                                                       
Query: 361 gagcggactgatcattgccagcatacttaggagttcacaacagttaaaatttttgaaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gagcggactgatcattgccagcatacttaggagttcacaacagttaaaatttttgaaagg 440

                                                                       
Query: 421 ttttccctcactctttacagtcctttaatttttaactaacaaagatgagagcttgaaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttttccctcactctttacagtcctttaatttttaactaacaaagatgagagcttgaaaag 380

                                                                       
Query: 481 aaaaatcagaaaatgaatgggactcctgtaaagtggcaga---------------aaaac 525
           |||||||||||||||||||||||||||||||| |||||||               |||||
Sbjct: 379 aaaaatcagaaaatgaatgggactcctgtaaattggcagaaaaacaaaacaaaacaaaac 320

                                                                  
Query: 526 aaaacaaaacaaaacaaaacaaaacatgaaggttacatgcacacctgattgggtt 580
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 319 aaaacaaaacaaaacaaaacaaaacatgaaggttacatgcatacctgattgggtt 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)