Query= MSMg01no117_m16.b1 MSMg01no117_m16.b1 CHROMAT_FILE:
MSMg01no117_m16.b1 PHD_FILE: MSMg01no117_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:27 2005
(580 letters)
>mm_chr2_143159828_143160807
Length = 980
Score = 1044 bits (540), Expect = 0.0
Identities = 570/582 (97%), Gaps = 6/582 (1%)
Strand = Plus / Minus
Query: 3 gaattccacacccct---tcccccttaccccataaaaacccctagctttccagcctcgtg 59
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 gaattccacacccctaag--ccccttaccccataaaaacccctagctttccagcctcgtg 918
Query: 60 gctgacatccggtatctcctgtatgggatgcatgttggtccggagctgtcctcatgtaat 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 917 gctgacatccggtatctcctgtgtgggatgcatgttggtccggagctgtcctcatgtaat 858
Query: 120 tacatcaagagatggtccttcgtga-ttttttgggtgcacgccgaatcggaattgggtgg 178
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 857 tacatcaagagatggtccttcgtgatttttttgggtgcacgccgaatcggaattgggtgg 798
Query: 179 gggtttccccactaggtctaacaggtcccctgagtttggaggaaagaaagtaagagggag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gggtttccccactaggtctaacaggtcccctgagtttggaggaaagaaagtaagagggag 738
Query: 239 agagtagaagttgatagagcattgggaagccatccataaagtatggtactggcccaatga 298
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 737 agagtagaagttgatagagcattgggaagccatccataaagcagggtactggcccaatga 678
Query: 299 actatcagatccttggttctctcacaaggagggaacagggagctgtggggctctagacac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 actatcagatccttggttctctcacaaggagggaacagggagctgtggggctctagacac 618
Query: 359 aatggagtatcgatggagagtgctgggctcactggatctgactaccatcctgagttccat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aatggagtatcgatggagagtgctgggctcactggatctgactaccatcctgagttccat 558
Query: 419 gggctgaatgagcttcttcacttgctagtccctttcctgcttctctgattatcaccattt 478
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 557 gggctgaatgagcttcttcacttgctagtccctttcctgcttctctgattgtcaccattt 498
Query: 479 tcttccagccccagagctgatttccacgggcagcatcatctacattttgtcttctagaac 538
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 497 tcttccagccctagagctgatttccacgggcagcatcatctacattttgccttctagaac 438
Query: 539 ccatttgaattcagctagtggaggcattctcaagaaattgag 580
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccatttgaattcagctagtggaggcattctcaagaaattgag 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_m16.g1 MSMg01no117_m16.g1 CHROMAT_FILE:
MSMg01no117_m16.g1 PHD_FILE: MSMg01no117_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:27 2005
(506 letters)
>mm_chr2_143044619_143045524
Length = 906
Score = 880 bits (455), Expect = 0.0
Identities = 490/505 (97%), Gaps = 10/505 (1%)
Strand = Plus / Plus
Query: 5 cttttcgcatgttaagccagttgtacattcagcctttcttcatccttcttcctgatttcc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cttttcgcatgttgagccagttgtacattcagcctttcttcatccttcttcctgatttcc 265
Query: 65 atgtttttgtttttgtttttttt--ttttttttgtattttcacttttatggagagtgttt 122
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 266 atgtttttgtttttg---tttttggttttttttgtattttcacttttatggagagtgttt 322
Query: 123 cagcaaggtaccaggctgacctaaaactcacaattctcagtcttccttgtacctaatctc 182
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 caccaaggtaccaggctgacctaaaactcacaattctcagtcttccttgcacctaatctc 382
Query: 183 ccattttggattcccactttctgatccctttacccatgttcttcccctaataactgttcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccattttggattcccactttctgatccctttacccatgttcttcccctaataactgttcc 442
Query: 243 tcaagtcaaatgtaggtcctcttctccataaggccttccttatttcccaggctgatggtc 302
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcaagtcaaatgcaggtcctcttctccataaggccttccttatttcccaggctgatggtc 502
Query: 303 cattgtcattgagcttacggagggtaacatctgacttgcttttgtattattgtctgttgc 362
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 503 cattgtcattgagcttacggaggataacatctgacttgcttttgtatt---gtctgttgc 559
Query: 363 ttctggagtactgctttgtacattacaagcccatatctgttatgtaactaagagaaaaac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttctggagtactgctttgtacattacaagcccatatctgttatgtaactaagagaaaaac 619
Query: 423 agagaatggggctgtaggagggagtatatgatgccctgcctgggaatgat-tatgtttga 481
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 620 agagaatggggctgtaggagggagtatatgatgccctgcctgggaatg-tgtatgtttga 678
Query: 482 agagctgacatgggataataatgtt 506
|||||||||||||||||||||||||
Sbjct: 679 agagctgacatgggataataatgtt 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
