BAC Information

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BAC

Clone NameMSMg01-118B17
Chromosome2 (Build37)
Map Location 89,134,064 - 89,134,534
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229
Downstream geneOlfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118B17.T7 (MSMg01no118_b17.b1)MSMg01-118B17.TJ (MSMg01no118_b17.g1)
ACCAG329068AG329069
length729710
length of high quality
(start - end)
231 (137 - 367)466 (73 - 538)
definitionCHROMAT_FILE: MSMg01no118_b17.b1 PHD_FILE: MSMg01no118_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:51 2005CHROMAT_FILE: MSMg01no118_b17.g1 PHD_FILE: MSMg01no118_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAACANAATAGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTACCTTATCTTTAAAGAAGAGCTAATGCCAAT
GCTCCTTAAATTATTTCACAAAATAGAAACAGACCGCATATTGCCAAATT
TATTTTAGGGCAACTAGAGATCAAGGGGATACAAGTTTGGTAGAAAGAAG
TCAAAGTGTTGTTATGTGCAAATGTTATAATAATATAAATAAATGACACC
AAAAATTCTACCAGGGAACGGTAGGGGAAGAGCTGCTACTAAAATCGTGT
TCCCTAATTGTTTCTTGATTATGTCAATAAAAACAGCAGAAGCCAGCCAC
TGGGGGAATAAAGGGTGGTTGTTTTTTCCCACCCCACCACGAAGAGAAAA
GGACAGAGGGGAGGATTGCGTATTTAGACCAGGCTGAGGAGCAGATAGGA
TGCAGCATATATGTAAGTCTCTTGAGGCTCCTGTAGTATGTAGCCCTGCC
ACCTGCAGAGGCCGAGGAGGATGGAAAAGGCTACTGTTAAGTTTAAGATA
GGGAACTCTTCACCCAGCCATCGAGTTATCTGGTTAGCTTTAAAATAATA
AAAGTTTCTAGAGTTTTCCTTCCTCAGAGCTAAAGGAGGCAGGAGAAGAT
AGTAGGCATCCTGTGCAGTTAGCCCGCCGCGCTCTAACAGTAGCTCCCAG
CGTTTTCGTTAAGGCTGGTTGTTGACAGN
ATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTAATTACTTCAGGGATCAAGATTATT
AGAAGGAGAAAAGTTAGGGAAATCTATAAAACATTGGCAAGAAAATATTT
TTAAACTGTTACAATGTCTGTATGAATACCCAGCAGTTCTTAACAGTATA
GTTGAAAATTTCTCAACCTATCTCTGTTATTGTAAAAGTTATAAAGAATA
TTTTTTAAAAGTTAGGTTAAGGATCTCACTATTTTCTTCAACTATTTTTT
TTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCAC
TTTGTAGACCAGGCTGTCCTGGAACTCAAAAATCTGCCTGCCTCTGCCTC
CCAAGTACTGGGATTAAAGGCGTGTGTCACCACCGCTCGGCCACTTCAAC
TATTTTTAATTGAACCAAGAAAAATATTCTACATAAAGTTCTTTCATAGA
TGAAAGTTTTCATACTATTAAGACCACTCTCTTTGAAGTGAAGCAGGATG
ATGAAATTTAAATGTATATATTTATGCTAAATTATTGATACAAGACATGA
AATACCATTCTAATTGTTAATACATAAAAGGCAAGCAATGTGCAAAGATT
TTGATCCTTGGCTTTTCAAGCCATCTAAGTCCATGTTGGGTTTGGATTTC
ACCTGTATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_b17.g1 MSMg01no118_b17.g1 CHROMAT_FILE:
MSMg01no118_b17.g1 PHD_FILE: MSMg01no118_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:51 2005
         (466 letters)



>mm_chr2_89133864_89134729
          Length = 866

 Score =  777 bits (402), Expect = 0.0
 Identities = 453/476 (95%), Gaps = 15/476 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaattacttcagggatcaagattattagaaggagaaaagttagggaaatctataaaac 60
           |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 201 attaattacttcagggatcaagattattagaaggagtaaagttaggaaaatctataaaac 260

                                                                       
Query: 61  attggcaagaaaatatttttaaactgttacaatgtctgtatgaatacccagcagttctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attggcaagaaaatatttttaaactgttacaatgtctgtatgaatacccagcagttctta 320

                                                                       
Query: 121 acagtatagttgaaaatttctcaacctatctctgttattgtaaaagttataaagaatatt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 acagtatagttgaaaatttctcaacccatctctgttattgtaaaagttataaagaatatt 380

                                                                       
Query: 181 ttttaaaagttaggttaaggatctcactattttcttcaactattttttttttttgagaca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 381 ttttaaaagttaggttaaggatctcactattttcttcaactattttttttt---gagaca 437

                                                                       
Query: 241 gggtttctctgtatagccctggctgtcctggaactcactttgtagaccaggctgtcctgg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 438 gggtttctctgtatagccctggctgtcctggaactcactttgtagaccaggctggccttg 497

                                                                       
Query: 301 aactcaaaaatc-tgcctgcctctgcctcccaagtactgggattaaaggcgtgtgtcacc 359
           |||||| ||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 498 aactcagaaatcct-cctgcctctgcctcccaagtactgggattaaaggcgtgcgtcacc 556

                                                                       
Query: 360 accgctc-ggccacttcaactatttttaatt--------gaaccaagaaaaatattctac 410
           ||||| | |||||||||||||||||||||||        |||||||||||||||||||||
Sbjct: 557 accgc-ctggccacttcaactatttttaattttataattgaaccaagaaaaatattctac 615

                                                                   
Query: 411 ataaagttctttcatagatgaaagttttcatactattaagaccactctctttgaag 466
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 616 ataaagttctttcatagatgaaggttttcatactattaagaccactctctttgaag 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)