BAC Information

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BAC

Clone NameMSMg01-118I13
Chromosome2 (Build37)
Map Location 15,062,518 - 15,063,123
singlet/doubletsinglet
Overlap genenone
Upstream geneStam, 2010003H20Rik, Mrc1, Slc39a12, Cacnb2, LOC100041164, LOC625335, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061
Downstream geneLOC667329, LOC227588, LOC625457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118I13.T7 (MSMg01no118_i13.b1)MSMg01-118I13.TJ (MSMg01no118_i13.g1)
ACCAG329381AG329382
length696692
length of high quality
(start - end)
603 (63 - 665)293 (79 - 371)
definitionCHROMAT_FILE: MSMg01no118_i13.b1 PHD_FILE: MSMg01no118_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:25 2005CHROMAT_FILE: MSMg01no118_i13.g1 PHD_FILE: MSMg01no118_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGACCGCGGAATTC
CACACATGTCGGAGAGGAGCACAGGAGGGTCTAATGAGCATCCTCAGATC
TCCTTCTCTGAGAGAAAGTCAACAGTCTCTATCTTGTCAGGGTCATAATA
GCCATGTTATGCCCAGAGAAGAGTGTGAATGGATGGAGAGCACTCATTGA
ACTCAGCAATAACTGGAAAAGTTTTCAGATGAAAAAAAAAAAAAGGTAAG
AAGATTCAAAACTGAGATCAACAGAAGTCAGATGATGCAGCCATGCAAAG
GCATTTTCAAAGTCTTGTTCTTCTGCAATGCTCTTGGGTTCTACAAAGAG
TAAGTAGCTAACACAAAGTAGAGGACTCAGCAACCAACTTACTTGACACT
AAGCAGGGGATGAATTCTTAGTGCCTGCAAGTCAGCAGAGGCCAAGTGGC
AACTGAGTTCTGCAGAGAAGAGTAAAGCCTGGCTGTGGCTCCGTTGATCA
GGTTAGCAGAGATGGCCTGTTTCAGACAGGGAATATTGGGCAGCAGAGCA
AGTTTTCTAATGTTAGGGCATCCTCCCAACTGCCTAGAAAGGGGCTTAAG
TGGCAGTGCCTTCTAGCTGTAAGTCCCTTTTCATCAGATAATGATGTGGA
CTGAACAGCCTTGAGAGGTCTCTGCAGAAAGTGTGCTATCCTCATT
NCCACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCTAGTACACATTGGGCAA
CATCCTCTTCTAGCCTCTATGGGCACATGTACGCATGTCCACACACAAAA
GAAAACTCTGTTTTTTCTACTGCTTACTAAGCCCTCAATGATGCTTAGTG
ACACAAGTCTGGAAATAGATTACGAATGTACATGTGCTACGTATACCTAT
AACCTCAGTATGTCAGATGCTAATGCAGAAAATTTATATGTTCAGAAGCA
GCCTGGACCACACAGTGACACCCCATCTTATAGTTTTGGAGGAAAATATG
ATATTTTTTGCTTATAGCAATCTCTTATCTATTTGGTACTTAAGGACATT
GTTATAAAAACACCATTTCATAGATTTAAGCAACTAACAAAGCCAAGCAG
TTTACTTACAGTGACCAACAGGAGGATTTTAAATGCCTCTCTGCTCCATG
AGTTTTGCTACACATGTACTAGCTATCAAACAACATGCAAAAGCCTGAAA
GTAGAACGATGGATTTCATAAAGCTTCTGCAGCCAGGCGTTTAACACAGC
AATGAGGCAGATAGGAGCCACTGGAGTGCAAAATGAAAGCAGTGTTCTTA
TGGTGAACCCAGTGCCTCAGAGCTGATGCTGCATAATCGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_i13.b1 MSMg01no118_i13.b1 CHROMAT_FILE:
MSMg01no118_i13.b1 PHD_FILE: MSMg01no118_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:25 2005
         (603 letters)



>mm_chr2_15062318_15063323
          Length = 1006

 Score = 1027 bits (531), Expect = 0.0
 Identities = 587/607 (96%), Gaps = 5/607 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggagcacaggagggtctaatgagcatcctcagatctccttctctgagagaaagtcaa 60
           ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 806 agaggagtacaggagggtctaatgagcatcctcagctctccttctctgagagaaagtcaa 747

                                                                       
Query: 61  cagtctctatcttgtcagggtcataatagccatgttatgcccagagaagagtgtgaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cagtctctatcttgtcagggtcataatagccatgttatgcccagagaagagtgtgaatgg 687

                                                                       
Query: 121 atggagagcactcattgaactcagcaataactggaaaagttttcagatg---aaaaaaaa 177
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 686 atggagagcactcattgaactcagcaataactggaaaagttttcagatgaaaaaaaaaaa 627

                                                                       
Query: 178 aaaaaggtaagaagattcaaaactgagatcaacagaagtcagatgatgcagccatgcaaa 237
           |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 626 aaaaaggtaagaagatacaaaactgagatcaacagaagtcagatgatgcagccctgcaaa 567

                                                                       
Query: 238 ggcattttcaaagtcttgttcttctgcaatgctcttgggttctacaaagagtaagtagct 297
           | ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gacattttcaaagtcttggccttctgcaatgctcttgggttctacaaagagtaagtagct 507

                                                                       
Query: 298 aaca-caaagtagaggactcagcaaccaacttacttgacactaagcaggggatgaattct 356
           || | |||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 506 aa-agcaaagtagaggagtcagcaaccaacttacttgagactaagcaggggatgaattct 448

                                                                       
Query: 357 tagtgcctgcaagtcagcagaggccaagtggcaactgagttctgcagagaagagtaaagc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tagtgcctgcaagtcagcagaggccaagtggcaactgagttctgcagagaagagtaaagc 388

                                                                       
Query: 417 ctggctgtggctccgttgatcaggttagcagagatggcctgtttcagacagggaatattg 476
           |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 387 ctggctgtggctccattgatcaggtgagcagagatggcctgtttcagacagggaatattg 328

                                                                       
Query: 477 ggcagcagagcaagttttctaatgttagggcatcctcccaactgcctagaaaggggctta 536
           ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 327 ggcagcagagcaagtttgctaatgttaggacatcctcccagctgcctagaaaggggctta 268

                                                                       
Query: 537 agtggcagtgccttctagctgtaagtcccttttcatcagataatgatgtggactgaacag 596
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agtggcagtggcttctagctgtaagtcccttttcatcagataatgatgtggactgaacag 208

                  
Query: 597 ccttgag 603
           |||||||
Sbjct: 207 ccttgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1006
Length adjustment: 10
Effective length of query: 593
Effective length of database: 996
Effective search space:   590628
Effective search space used:   590628
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)