BAC Information

Click to search

BAC

Clone NameMSMg01-118O18
Chromosome2 (Build37)
Map Location 45,406,422 - 45,406,949
singlet/doubletsinglet
Overlap genenone
Upstream geneGtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604, LOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118O18.T7 (MSMg01no118_o18.b1)MSMg01-118O18.TJ (MSMg01no118_o18.g1)
ACCAG329669AG329670
length6911,146
length of high quality
(start - end)
533 (43 - 575)---
definitionCHROMAT_FILE: MSMg01no118_o18.b1 PHD_FILE: MSMg01no118_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:55 2005CHROMAT_FILE: MSMg01no118_o18.g1 PHD_FILE: MSMg01no118_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAAATTTGCGGCGCTATACGACTCCTATATTCCAGAAATCCGCGGAATT
CTGCTTTTTGTTCATATTCTATTGGTGAATGAAGAAACATTTATTATGTG
GCTTTGTTCTAAAATCAGACTTCTTATGTCTTAGAAAAAGTTCAAAAAAC
TTGAGAGATTTTCCTTTTCAGAATCTAGTCTCCTGAGTTTATATAAGAAC
CATACATAGACACAAAGTGCAGGGGCATTCTGTGATATTTTGGTAGGTCT
GAGGTATTCCCACCTCTGTACATGTTATCCATGGTGTAGCAGACACACTA
AGATATTATTGAACATCCCAAATTGATTTGTTTGTTCATAATCACAGGGA
TATATTCTGAGGAACTTGCTATGGAATTATCTCATCATGCTTGTGTACAC
ATCAAGTACTGCACACGCACACACACAGAAAATTACTAGATAGGTACTCA
GAAGTGGGAATCTTCCAGCTTCATCATACTCTTATGAGAATGTATGTACA
TGTCATCTCTTATTGATTGAAACATACATTGTACATAACTCTGTAGTTGT
AGTTGATTGACACAATTATTTATGTATACTTAAAATACGATGTCTAATTT
TTTGGTTTTGAGTACCTTTTTCTAGTTAGCGATGGATCATGGCCTCCTTA
ACTTCTGTGCTACATTCTCTGCATTCATACTTTCTAAAGAT
TTTTTGTTTGTTTGTTTGTTGTTTTTTTGTTTTTATTTGTGCTTGTGNCG
CATGCGGGTGCTTTTCNTGTTGCTTTGTGCTGNTAGTGTCGGCCTGTGTA
TGTAGACACTGTGTGCATCTCAGCCGTGTATCGCTGCCGTGCGACATTGT
TGTGTATGCAGCATGTCTGTGCCTGGCGCTAGTGTGCCGAGTGTGTGGCT
GATGAATGACACGGCATCGTACTCGCTGCGATGGCTACGCAGCTGAGTAC
GTGCGGGCGGCAGCTTGCAGGTCTGCAGGGCGTCCTGTGCGCGAGCCTCT
CGAGGTGCGCCATTGTGCTACCGTATTGTGTGAGTGGTGTGNTCTGTTAG
CGTGACCCGGACAGCGTTGTCAGTAGCTGGTGTGGTGTGCGGAGCTGTCT
GTCTACCGTAGTCGTGAGGCGGCCGCGTAGTTGCCGTGTGTGTGTGGTAG
TTCTAGAGTGCTGTATGTTGGAAGAAGTACGGGGATAGCAGTTGCGACAG
GTGGATGCCGATAATGNTGGAGCCATGGTGGTGAGCAGAGAGTAGATGGG
TAGGCTGGGAGTAACGGTGCTCTCAGTCCGCGCTTTNGTGTCGCCGAGCG
GGTGCTGCCCCGGTGGTGTATTTTGCCTTCGTGTACTGCATTCGACGCGG
AGTGGGTGGGTGATGNCGATTCGTGCTGACATTGTGACGTAGTACTGTCG
GTTGTCGCCATCGGCGCAGTGACGTGATCGGTGCCAGTACGGTGTGAGTG
TATCNTGAGGACAGTGGCTTGCCTGCATTGTGAGGAANTAGTTACTCGTA
TTGTGCGGATCATGCTGTACAGGTGTGAGGCACTCGACCCAACGTGTAGC
GAAGTCGCCATGACTACATCATCACTATGATGCTCTCGAGTGTGGCTCGC
ATGACGCAAACGCTACTTTCATGAGTAATGGACCGCGAATGGAGTGATGN
ANTAAGTGCGAGGACGCAGAGGACCAATCTGCATTACAACCTGATGGCAT
TGTATGAGAGCAAGCAGGAGTGACTTGGTGCTAAATATGGGCAAGGAGGA
TTAGAGAGCAAGAACAGGACATGGTGGTGGGCACTAGGAGAGTGCTGCAT
GCAACGATGACTAGTGCTGAGTTAGTGCNAGGTAGTCAGAGCACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_o18.b1 MSMg01no118_o18.b1 CHROMAT_FILE:
MSMg01no118_o18.b1 PHD_FILE: MSMg01no118_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:55 2005
         (533 letters)



>mm_chr2_45406219_45407151
          Length = 933

 Score =  946 bits (489), Expect = 0.0
 Identities = 519/529 (98%), Gaps = 2/529 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctgctttttg-ttcatattctattggtgaatgaagaaacatttattatgtggctt 62
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gaattctgctttttgctaaatattctattggtgaatgaagaaacatttattatgtggctt 672

                                                                       
Query: 63  tgttctaaaatcagacttcttatgtcttagaaaaagttcaaaaaacttgagagattttcc 122
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 671 tgttctaaaatcagacttcttatatcttagaaaaagttcaaaaaacttgagagattttcc 612

                                                                       
Query: 123 ttttcagaatctagtctcctgagtttatataagaaccatacatagacacaaagtgcaggg 182
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 611 -tttcagaatctagtctcctgagtttttataagaaccatacatagacacaaagtgcaggg 553

                                                                       
Query: 183 gcattctgtgatattttggtaggtctgaggtattcccacctctgtacatgttatccatgg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gcattctgtgatattttggtaggtctgaggtattcccacctctgtacatgttatccatgg 493

                                                                       
Query: 243 tgtagcagacacactaagatattattgaacatcccaaattgatttgtttgttcataatca 302
           |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 492 tgtaacagacacactaagatattattgaacatcccaaattcatttgtttgttcatgatca 433

                                                                       
Query: 303 cagggatatattctgaggaacttgctatggaattatctcatcatgcttgtgtacacatca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cagggatatattctgaggaacttgctatggaattatctcatcatgcttgtgtacacatca 373

                                                                       
Query: 363 agtactgcacacgcacacacacagaaaattactagataggtactcagaagtgggaatctt 422
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agtactgcacatgcacacacacagaaaattactagataggtactcagaagtgggaatctt 313

                                                                       
Query: 423 ccagcttcatcatactcttatgagaatgtatgtacatgtcatctcttattgattgaaaca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ccagcttcatcatactcttatgagaatgtatgtacatgtcatctcttattgattgaaaca 253

                                                            
Query: 483 tacattgtacataactctgtagttgtagttgattgacacaattatttat 531
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tacattgtacataactctgtagttgtagttgattgacacaattatttat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)