BAC Information

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BAC

Clone NameMSMg01-119F07
Chromosome2 (Build37)
Map Location 85,576,183 - 85,576,810
singlet/doubletsinglet
Overlap genenone
Upstream geneYpel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009
Downstream geneOlfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119F07.T7 (MSMg01no119_f07.b1)MSMg01-119F07.TJ (MSMg01no119_f07.g1)
ACCAG329977AG329978
length695702
length of high quality
(start - end)		602 (43 - 644)628 (75 - 702)
definitionCHROMAT_FILE: MSMg01no119_f07.b1 PHD_FILE: MSMg01no119_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:26 2005CHROMAT_FILE: MSMg01no119_f07.g1 PHD_FILE: MSMg01no119_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCGGCGCTATACGACTCCTATTTCGAGAAGAGCGCGGAATT
CATTATCTTCCCCGACTTTTAACATGAAGGGATGCTGAACTTTGTCAAAT
GCTTTTTCTGCATCTAATTAAATGATCATTTTTTTTCTTTGTGTTTGTTT
ATGTAGTGGATAACATTGATGGATTTCCGTATGTAGAACCATCCCTGTAT
CCCTGGGATGAAGCCTACTTGATAGTAGTAAGTGATCACTTTAATGTGTT
CTTGGATTCAGTTGGCAAGAATTTTATTGAGTGTTTTTGCATCGGTATTC
AAAAGGGAGATCAGGCTGATGTTCTCTTTATTTGTTGGGTCTTTGGTTTG
GTATCAACATAATTGTGGTTTCATAGAACTAATTGGATAGTGTTTCTTCT
GTTTCTATTTTGTAGAATAGTTTGAAGAGTATTAGTATTAGGTCTTCCTT
AAAGTTCTGATAGACTCTTCCACTAAACCTATCTGGTTCTGGGCTTTTTT
AGTTGAGAGACTATTAATGACTGCTTCTATTTATTTAGGGGTTATGGGAT
TATTTAGATGGTTTATCTAATCCTGTTTTAACTTTGGTACCTGGTATGTT
TCTAGAAAATTGTCCATTTCATCCAGATTTTCCAATTTTATTGAGTATAA
GCTTTTGTACAATGTTTTTGAGTTTCCACTGTTTCTGTTGTTATT

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCAGGAAAGAACTATCTACTCAAGG
AAGATGCAATATGTTCAGAGGTTTATAATAAAACAATGTCATATAAGATA
GTAAAAATAATATTACTAAGGTCATATTTTAAAATCAGCTACAATTCTGT
GCCTCTTACTAAGAGTCTCAAATTTCATTGAAAGACATAGGTAAAACATG
AATATCCTCTTCAAACTTCTACTTCATATCAACCCTTTCTCAAATTCAAC
TTGTATGTCCCTTATTTTTCTAGGGCATCTAATTTTTTAGATTATAATAC
AAAAATTCTCCTTTCCCGTTCCTCTATCTAAACCATCCCATTTATCCCTC
GCTCTCTCCTTTAAGTTCATTGCCCAATTAAACATAATTGTTATTGCACA
CATGTATGCATATGTATTATGCATGTGCATATGATATATATAAAATCTAT
AATCTATATCTATATTTATATATCCATATCTATTGCTCTTTGATTTGCTG
AATGTTAGATAATTAATAATAACTCAGTAAATATTTATGAAGTGCTTTCG
TGGTAAGAATGAGGCTGCATTAGGGCAGGGAACAAAAGCAGGGGACTGAA
CATCCTTAAGCCTAATGGTTATGGGGTCACAAAGATATATCTATATATCC
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_f07.g1 MSMg01no119_f07.g1 CHROMAT_FILE:
MSMg01no119_f07.g1 PHD_FILE: MSMg01no119_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:27 2005
         (628 letters)



>mm_chr2_85575984_85577011
          Length = 1028

 Score = 1199 bits (620), Expect = 0.0
 Identities = 626/628 (99%), Gaps = 1/628 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaggaaag-aactatctactcaaggaagatgcaatatgttcagaggtttataataaaa 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tccaggaaagtaactatctactcaaggaagatgcaatatgttcagaggtttataataaaa 259

                                                                       
Query: 60  caatgtcatataagatagtaaaaataatattactaaggtcatattttaaaatcagctaca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caatgtcatataagatagtaaaaataatattactaaggtcatattttaaaatcagctaca 319

                                                                       
Query: 120 attctgtgcctcttactaagagtctcaaatttcattgaaagacataggtaaaacatgaat 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attcagtgcctcttactaagagtctcaaatttcattgaaagacataggtaaaacatgaat 379

                                                                       
Query: 180 atcctcttcaaacttctacttcatatcaaccctttctcaaattcaacttgtatgtccctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atcctcttcaaacttctacttcatatcaaccctttctcaaattcaacttgtatgtccctt 439

                                                                       
Query: 240 atttttctagggcatctaattttttagattataatacaaaaattctcctttcccgttcct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttttctagggcatctaattttttagattataatacaaaaattctcctttcccgttcct 499

                                                                       
Query: 300 ctatctaaaccatcccatttatccctcgctctctcctttaagttcattgcccaattaaac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctatctaaaccatcccatttatccctcgctctctcctttaagttcattgcccaattaaac 559

                                                                       
Query: 360 ataattgttattgcacacatgtatgcatatgtattatgcatgtgcatatgatatatataa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ataattgttattgcacacatgtatgcatatgtattatgcatgtgcatatgatatatataa 619

                                                                       
Query: 420 aatctataatctatatctatatttatatatccatatctattgctctttgatttgctgaat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatctataatctatatctatatttatatatccatatctattgctctttgatttgctgaat 679

                                                                       
Query: 480 gttagataattaataataactcagtaaatatttatgaagtgctttcgtggtaagaatgag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gttagataattaataataactcagtaaatatttatgaagtgctttcgtggtaagaatgag 739

                                                                       
Query: 540 gctgcattagggcagggaacaaaagcaggggactgaacatccttaagcctaatggttatg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gctgcattagggcagggaacaaaagcaggggactgaacatccttaagcctaatggttatg 799

                                       
Query: 600 gggtcacaaagatatatctatatatcct 627
           ||||||||||||||||||||||||||||
Sbjct: 800 gggtcacaaagatatatctatatatcct 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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