Query= MSMg01no119_h03.b1 MSMg01no119_h03.b1 CHROMAT_FILE:
MSMg01no119_h03.b1 PHD_FILE: MSMg01no119_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:35 2005
(244 letters)
>mm_chr2_160859115_160859758
Length = 644
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%)
Strand = Plus / Minus
Query: 1 tgcactcttaagcagagaagaaatgtgagcagagaacagtcaaagacacaattaatgacc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 tgcactcttaagcagagaagaaatgtgagcagagaacagtcaaagacagaattaatgacc 385
Query: 61 gagtttaataagctggtgaaaatatcagcaatagacttgcagtctggtgaacctgaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagtttaataagctggtgaaaatatcagcaatagacttgcagtctggtgaacctgaagca 325
Query: 121 ggaagagtataggaagaaaatttttacctaggcagagcttatattctggaaactaaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaagagtataggaagaaaatttttacctaggcagagcttatattctggaaactaaagat 265
Query: 181 gacatttcaagagctattggggggaaatatggcttataacatgttaaatagtacagtatg 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 gacatttcaagagctattggggggaaatatggcttataacatattaaatagtacagtatg 205
Query: 241 taat 244
||||
Sbjct: 204 taat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no119_h03.g1 MSMg01no119_h03.g1 CHROMAT_FILE:
MSMg01no119_h03.g1 PHD_FILE: MSMg01no119_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:35 2005
(511 letters)
>mm_chr2_160793217_160794129
Length = 913
Score = 949 bits (491), Expect = 0.0
Identities = 507/513 (98%), Gaps = 2/513 (0%)
Strand = Plus / Plus
Query: 1 cttcagacagaggcatttttatagctcagctatagtacttctgtaatttaaacttaacgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcagacagaggcatttttatagctcagctatagtacttctgtaatttaaacttaacgt 260
Query: 61 gttctcttcccacctccctgctgacatagtgacaag--tcttcttaccatcatctttcca 118
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gttctcttcccacctccctgctgacatagtgacaagagtcttcttaccatcatctttcca 320
Query: 119 tgcggggagacgacacacattccgacacatggctacaaaactataaaaatagtgctccag 178
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tgcggggagacgacacacattccgacacatggctacaaagctataaaaatagtgctccag 380
Query: 179 gctctcatctgacttcttgtccaaacgagaaatgatgcggaactgtgtccagtcaaaggc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctctcatctgacttcttgtccaaacgagaaatgatgcggaactgtgtccagtcaaaggc 440
Query: 239 tttcttttcttgttcatacacaacaccaaaggaagacactgtcctatagaagtcagcttg 298
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcttttcttggtcatacacaacaccaaaggaagacactgtcctatagaagtcagcttg 500
Query: 299 ctctcttctagtccacctgagagttaattagaggaaaggtgagctgttttgtacttttag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctcttctagtccacctgagagttaattagaggaaaggtgagctgttttgtacttttag 560
Query: 359 aaacaggatcttgttgtgaccctgggatccaagctggccttgagttcaagatctgtctgc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 aaacaggatcttgttgtgaccctgggatccaagctggccttgagttcaagatctgcctgc 620
Query: 419 atcctcttcctgagtgctgggattacacatctgtatcactaagcttggtactggcttgtg 478
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 atcctcttcctgagtgctgggattacacatctgtatcactaagcttggcactggcttgtg 680
Query: 479 tattttattgttaagtcaaacagaaaggagagg 511
|||||||||||||||||||||||||||||||||
Sbjct: 681 tattttattgttaagtcaaacagaaaggagagg 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 913
Length adjustment: 10
Effective length of query: 501
Effective length of database: 903
Effective search space: 452403
Effective search space used: 452403
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
