Query= MSMg01no120_a21.b1 MSMg01no120_a21.b1 CHROMAT_FILE:
MSMg01no120_a21.b1 PHD_FILE: MSMg01no120_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:23 2005
(514 letters)
>mm_chr2_171824780_171825695
Length = 916
Score = 915 bits (473), Expect = 0.0
Identities = 505/521 (96%), Gaps = 12/521 (2%)
Strand = Plus / Minus
Query: 1 ggcagtccgttatggctgaccctatcagagaaggctataggttttgtttcttcattccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ggcagtccgttatggctgaccctatcagagaaggctataggttttgtttcttcattccct 657
Query: 61 ggaagccccgatgataggaaatgcagagctcaagtctcctctctaggtgcccccgctccc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 656 ggaagccccgatgataggaaatgcagagctcaagtctcctctctaggtgccccccctccc 597
Query: 121 ccaggccctcagcctagtccccagtgcaaatagggacctgctgtttgttaggagtgtatc 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 596 ccaggccctcagcctagtccccagtgcaaacagggacctgctgtttgttaggagtgtatc 537
Query: 181 ctgcccatggggtagaatgccagaaaccttccttactgatcacgctaagccacgctggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctgcccatggggtagaatgccagaaaccttccttactgatcacgctaagccacgctggcc 477
Query: 241 caggcaggacaaa----ttttaggaggtctgagctaatttcgacccctgcagagagagca 296
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 476 caggcaggacaaagcag----aggaggtctgagctaatttcgacccctgcagagagagca 421
Query: 297 ggagggtgagcccttcctgggcttcctggggggcaacaaacagcccagcttcgaattcag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggagggtgagcccttcctgggcttcctggggggcaacaaacagcccagcttcgaattcag 361
Query: 357 gaagccaagtgtccatcaatctgatgtgctaagaaaggggcgaggagacctgcccacagc 416
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gaagcc-agtgtccatcaatctgatgtgctaagaaaggggcgaggagacctgcccacagc 302
Query: 417 tgcttcccacacagcagagcaaagcactggagcactgtgggaagggagtc---agtacac 473
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 301 tgcttcccacacagcagagcaaagcactggagcactgtgggaagggagtccttggtacac 242
Query: 474 tgcttcttcatccacctgtgtgtactgacggcttgctccct 514
|||||||||||||||||||||||||||||| ||||||||||
Sbjct: 241 tgcttcttcatccacctgtgtgtactgacgacttgctccct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 916
Length adjustment: 10
Effective length of query: 504
Effective length of database: 906
Effective search space: 456624
Effective search space used: 456624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_a21.g1 MSMg01no120_a21.g1 CHROMAT_FILE:
MSMg01no120_a21.g1 PHD_FILE: MSMg01no120_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:23 2005
(576 letters)
>mm_chr2_171741245_171742221
Length = 977
Score = 1108 bits (573), Expect = 0.0
Identities = 576/577 (99%), Gaps = 1/577 (0%)
Strand = Plus / Plus
Query: 1 tggtcctgtatttca-tagtaaacaaactggcattttctcctgtcagctaatgaaacaat 59
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtcctgtatttcaatagtaaacaaactggcattttctcctgtcagctaatgaaacaat 260
Query: 60 tggggaccatcatgggatgaaaaatggacaaattaacagcttcattcgaagccggtgaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggaccatcatgggatgaaaaatggacaaattaacagcttcattcgaagccggtgaaa 320
Query: 120 cctttctcctctctttgtgatgacttggcaattctttactctagaaactggttttgaata 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttctcctctctttgtgatgacttggcaattctttactctagaaactggttttgaata 380
Query: 180 ctctgagggggagccgaagagaactatgggtaactctattaaggatagtattatttattt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctgagggggagccgaagagaactatgggtaactctattaaggatagtattatttattt 440
Query: 240 atttgttcgttcattttatctccataggtataagaaacagaagccaaagacacagaaaac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgttcgttcattttatctccataggtataagaaacagaagccaaagacacagaaaac 500
Query: 300 actcttcctgtccaagataactgttcctttgtcatcacaaggttatttctagaaagtctt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcttcctgtccaagataactgttcctttgtcatcacaaggttatttctagaaagtctt 560
Query: 360 tgcaagggaagagttaaaagcttaaaaattatacaaccccaagatgaagcataaaaaatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcaagggaagagttaaaagcttaaaaattatacaaccccaagatgaagcataaaaaatt 620
Query: 420 ggattcccaggaacacgccagtcaattttatggatagtggcttgtctccagagtaagata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggattcccaggaacacgccagtcaattttatggatagtggcttgtctccagagtaagata 680
Query: 480 tttgagtgtaaaaaaagtggggttttgagccaccataagtaaattataagacccaatatg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgagtgtaaaaaaagtggggttttgagccaccataagtaaattataagacccaatatg 740
Query: 540 aggatggaaagctgtccttaaatccagtcatatggac 576
|||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggatggaaagctgtccttaaatccagtcatatggac 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 977
Length adjustment: 10
Effective length of query: 566
Effective length of database: 967
Effective search space: 547322
Effective search space used: 547322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
