Query= MSMg01no120_c08.b1 MSMg01no120_c08.b1 CHROMAT_FILE:
MSMg01no120_c08.b1 PHD_FILE: MSMg01no120_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:29 2005
(515 letters)
>mm_chr2_38837621_38838536
Length = 916
Score = 893 bits (462), Expect = 0.0
Identities = 501/514 (97%), Gaps = 3/514 (0%)
Strand = Plus / Minus
Query: 4 ggaattcactctgtataccaggctggcctcaaactcagaaacccgcctacctctgcctcc 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggaattcactctgtagaccaggctggcctcaaactcagaaacccgcctacctctgcctcc 619
Query: 64 caagtgctgggattaaaggcgtgcaccaccagtgccaggcaaaataaacatgtc-ttttt 122
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 618 caagtgctgggattaaaggcgtgcgccaccagtgccaggcaaaataaacatgtctttttt 559
Query: 123 ttaaaaacaaaaacaaaaaagcatgtcttataaattgaatgtaaatgtttgttgcaggag 182
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttaaaacaaaaacaaaaaagcatgtcttataaattgaatgtaaatgtttgttgcaggag 499
Query: 183 gcacccgaccacatccaacaaacaatccagggaacaaaatgcacctgaggtaaagatttc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gcacccgaccacatccaacaaacaatccagggaacaaaatgcacctgaggtaaagatttc 439
Query: 243 tctgccctctttcctggagcctccctcaccgttacccagggtcttgttcaccatgggtca 302
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 438 tctgccctttttcctggagcctctctcaccgttacccagggtcttgttcaccatgggtca 379
Query: 303 ttcctttgaccattttccaacaaaccctgccccaaccaaatcccagctgcgggggaaaca 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 378 ttcctttgaccattttccaacaaaccctgccccaaccaaatcccagctgcggggaaaaca 319
Query: 363 gaaaatacaaacacctgctgagtggttttggtcaacttgacacaaactagaag-cacccg 421
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct: 318 gaaaatacaaacacctgctgagtggtcttggtcaacttgacacaaactag-agtcacccg 260
Query: 422 ggaagagtgactcaagtaagggatttcctccatcaaactggcccgcggaagtgtctgggg 481
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 259 ggaagagtgactcaagtaagggatttcctccatcaaattggcccgcggaagtgtctgggg 200
Query: 482 gcatcagagattcgtgattcatctgggaagactc 515
||||||| |||| |||||||||||||||||||||
Sbjct: 199 gcatcagtgattagtgattcatctgggaagactc 166
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space: 457530
Effective search space used: 457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_c08.g1 MSMg01no120_c08.g1 CHROMAT_FILE:
MSMg01no120_c08.g1 PHD_FILE: MSMg01no120_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:29 2005
(514 letters)
>mm_chr2_38749660_38750573
Length = 914
Score = 913 bits (472), Expect = 0.0
Identities = 499/514 (97%), Gaps = 12/514 (2%)
Strand = Plus / Plus
Query: 1 aatgccagcctgagctacatgaaactttatttcaaaaaaaaacaaacaaacaaacaaacg 60
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 213 aatgccagcctgag-tacatgaaactttatttc---aaaaaacaaacaaacaaacaaaca 268
Query: 61 aacaaaaaaaagtttaatataaaagtgtaatatggaagcatgatgatctgagatatctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aacaaaaaaaagtttaatataaaagtgtaatatggaagcatgatgatctgagatatctaa 328
Query: 121 tcaagaacagaaataataaagaacataggagccgggtagtagtagagcacttgggaggca 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 329 tcaagaacagaaataataaagaacataggagccgggtagtagtggagcacttgggaggca 388
Query: 181 gaggctggcagatctgagtttgaggccagcctggtctacagagtgagttccaggacagcc 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaggctggcagatctgagttcgaggccagcctggtctacagagtgagttccaggacagcc 448
Query: 241 aggactacacagagaaaccctgtctcgaaaaaacagaaagagagagaaagagagagagag 300
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 449 aggactacacagagaaaccctgtctcgaaaaaacagaaagagagaga--------gagag 500
Query: 301 aaaaaagaaaaaagaaaagaagaaagaaggaaagaatgaacggaacaaacataggatgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaaagaaaaaagaaaagaagaaagaaggaaagaatgaacggaacaaacataggatgaa 560
Query: 361 atgtggaagacacctaaaaattcaaccatagggaatgattacattctagtatacatattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtggaagacacctaaaaattcaaccatagggaatgattacattctagtatacatattg 620
Query: 421 ttcattatggtattttctgaacgttacatatgtgtaacgttggttgtggtataagaggcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcattatggtattttctgaacgttacatatgtgtaacgttggttgtggtataagaggcc 680
Query: 481 agaggtggtgatacactcctgaaatcccatggaa 514
||||||||||||||||||||||||||||||||||
Sbjct: 681 agaggtggtgatacactcctgaaatcccatggaa 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
