BAC Information

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BAC

Clone NameMSMg01-120D14
Chromosome2 (Build37)
Map Location 153,760,313 - 153,760,944
singlet/doubletsinglet
Overlap geneLOC100043870
Upstream geneDusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3
Downstream geneGm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120D14.T7 (MSMg01no120_d14.b1)MSMg01-120D14.TJ (MSMg01no120_d14.g1)
ACCAG330644AG330645
length705797
length of high quality
(start - end)
640 (43 - 682)182 (121 - 302)
definitionCHROMAT_FILE: MSMg01no120_d14.b1 PHD_FILE: MSMg01no120_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:35 2005CHROMAT_FILE: MSMg01no120_d14.g1 PHD_FILE: MSMg01no120_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAGAGGATCCGC
GGAATTCCACATTCCCCAGACTGGCTGGGGGTTTCCATGCTGCTGTGATT
TAAGTGTGAAAAGTCCCCACAGGATTTGTGTGTTAAAGCTTGATCCCCTA
CTGCAGCATGTATGGGAAGGGATTGGGTCATGAAGGCACTGTCTTCAGTG
GTTCGTCCATAGACGGGCTCATAGCTTAAAAGGACTTAGCAACTGGGCCT
AGTTGGAGGCCAAGTTCTGAAGAATATATCTTATCTCTGATCCCTTCCAT
TGCCCTTTCTGCCTTCTAGTCTCCACGGGGCGAGCCACGTTCCTTCTCCA
TGTTCTTCTGCTCTGACGTTCCATCATTCCACAGGCCTGAAAGATAAGGA
GCTAATTGACTCTACAGACTGGGAACTCTGAGCTTAAAGAGCTGCTTCTT
CTTTTATGGTTTTCATCAGGTGTTTTGTCAGAGTAATAGAAAACAGGCGC
TACACATCCTGCTCTTACAACTCAGAAACGGAGGCTCCAAGAAGTGTCAG
ACAGCCCCTAAGTGGCAGAAGCTGGCAGTCTGGGACTCAAACAAGATCCT
GTTGCCCCCAATCCCAAAGCTGGCCTGTCCACTGTGCCACTGTGTCATGT
GTCACCATGATGGTGTTGTCACACACTCACTAAGGGATAGGCTCAGTCTC
ATACN
TTATTACCTAGGAAACCAACATCATAACACATCCACATCAACCAACACTC
ATCCCGATGATATGTGTAGCCTGGGGGCGCCTGTTCCAAACAGGAGGTGA
ACTATAGAATTTCCGCGGAATCCTAAGCCTGATAAACAGCTTCAATGAAG
TAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTGTACACA
AAGGATAAACAGGCTGAAAAAGAAATTAGGGAAACAACACCCTTCTCAAT
AGTCACAAATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTGA
AACATCTGTATGATAAGAACTTCAAGTCTCTAAAGAAAGAAATTAACGAA
GATCTCAGAAGATGGAAAGATATCCCATGCTCATGAATTGGCAGGATCAA
CATTGTAAAAATGGCTATCCTGCCTAAAGCAATCTACAGATTCAATGCAA
TCCCCATCACAATTCCTACTCAATTCTTCAACGAATTAGAAAGGGCAACC
AGCATATTCCTCTGGAACATTAAAAAACCGAAGTATAATAAAAACTCTTC
CCACGGATAAAAAAACCTCCCGGTGGAATTATCCCGCCGCACCCAAAACT
GTATTACGGAAAAATTGCAAACCCATACCGCTTGGGACTTTATCCTATCG
ACCCATCACTTTACGATCCTTGTTAACCCTATTTGAATGAACCAAAAGAT
CGAACCCAACCTACCCATTGGGAACTCCACCCATTGAAAAAGCGGCCCTA
AACACCATTCATTCGTAAAAAACCCCCCCACCTTTAAACTAAATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_d14.b1 MSMg01no120_d14.b1 CHROMAT_FILE:
MSMg01no120_d14.b1 PHD_FILE: MSMg01no120_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:35 2005
         (640 letters)



>mm_chr2_153760104_153761144
          Length = 1041

 Score = 1122 bits (580), Expect = 0.0
 Identities = 619/632 (97%), Gaps = 1/632 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaattccacattccccagactggctgggggtttccatgctgctgtgatttaagtgtgaaa 69
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattccacagtgcccagactggctgggggtttccatgctgctgtgatttaagtgtgaaa 269

                                                                       
Query: 70  agtccccacaggatttgtgtgttaaagcttgatcccctactgcagcatgtatgggaaggg 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agtccccacaggatttgtgtgttaaagcttgatcccctactgcagcatgtatgggaaggg 329

                                                                       
Query: 130 attgggtcatgaaggcactgtcttcagtggttcgtccatagacgggctcatagcttaaaa 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 attgggtcatgaaggcactgtcttcagtggttcgtccatagacgggctcatagcttaaaa 389

                                                                       
Query: 190 ggacttagcaactgggcctagttggaggccaagttctgaagaatatatcttatctctgat 249
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 390 ggacttagcaactgggcctagttggaggccaagttctgaagagtatatcttatccctgat 449

                                                                       
Query: 250 cccttccattgccctttctgccttctagtctccacggggcgagccacgttccttctccat 309
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 450 cccttccattgccctttctgccttctagcctccacggggcgagccacgttccttctccat 509

                                                                       
Query: 310 gttcttctgctctgacgttccatcattccacaggcctgaaagataaggagctaattgact 369
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gttcttccgctctgacgttccatcattccacaggcctgaaagataaggagctaattgact 569

                                                                       
Query: 370 ctacagactgggaactctgagcttaaagagctgcttcttcttttatggttttcatcaggt 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctacagactgggaactctgagcttaaagagctgcttcttcttttatggttttcatcaggt 629

                                                                       
Query: 430 gttttgtcagagtaatagaaaacaggcgctacacatcctgctcttacaactcagaaacgg 489
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 630 gttttgccagagtaatagaaaacaggcgctacacatcctgctcttacaactcagaaatgg 689

                                                                       
Query: 490 aggctccaagaagtgtcagacagcccctaagtggcagaagctggcagtctgggactcaaa 549
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 690 aggctccaagaagtgtcagacagcccctaagtggcagaagcaggcagtctgggactcaaa 749

                                                                       
Query: 550 caagatcctgttgcccccaatcccaaag-ctggcctgtccactgtgccactgtgtcatgt 608
           ||||||||||||||||| || ||||||| ||||||||||||||||||||| |||||||||
Sbjct: 750 caagatcctgttgcccctaaccccaaaggctggcctgtccactgtgccaccgtgtcatgt 809

                                           
Query: 609 gtcaccatgatggtgttgtcacacactcacta 640
           ||||||||||||||||||||||||||||||||
Sbjct: 810 gtcaccatgatggtgttgtcacacactcacta 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1041
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1031
Effective search space:   649530
Effective search space used:   649530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)