BAC Information

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BAC

Clone NameMSMg01-120F03
Chromosome2 (Build37)
Map Location 178,417,471 - 178,561,612
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
Downstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120F03.T7 (MSMg01no120_f03.b1)MSMg01-120F03.TJ (MSMg01no120_f03.g1)
ACCAG330717AG330718
length720723
length of high quality
(start - end)
485 (71 - 555)243 (68 - 310)
definitionCHROMAT_FILE: MSMg01no120_f03.b1 PHD_FILE: MSMg01no120_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:43 2005CHROMAT_FILE: MSMg01no120_f03.g1 PHD_FILE: MSMg01no120_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,417,471 - 178,417,955)(178,561,370 - 178,561,612)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGCGGA
ATTCATCGCTGTGCCGAAGAGGGAGCCTTCTTTGGCTTGTGACCATATTA
AATACAATTTGCTACTAAAGGCACCTGATACATTTAGCTAGATATTGGAA
GGGGTAGAAGAAAGATCTATTGAGATAAAGTTTCGGACAGCTTGTCGAAT
GCGAAGCCGTCACATGCTGCACGGTGTTACACAAGTCAGGAAGACCTGAG
GAAGATTCTCAAACCTCTTAAATAGTGTTTTCTTCTCCATTTCTGCATCA
GAAATATGGAGCACAGCCGTTCTCTTTAACGCAGATTTTAATAGGAGATA
TTCGTCTGCATTGCTCCGTAGTTTCTGCTTGCATGGGGCTGCCATTTACA
ACAAGTGTAATAGCATCTTTGAGCTTTTTAATTAAAAATTAATTAGGAGA
TTTAAGCACAAACTCATTGGGGGTTACTGTACAATAACATGTTTACAAAA
TTAGGTCTGGGCTTTTTGTTCCAGCTAAGTGTTTCAATCAATTCTGTGTC
TATTACATGTAATTACGTATGATGCTTTCTTAGAACGATAAGGCAGCCTT
TAAAAGCAGTTGGCAGACGTCTACTCATTCCCGTCTGCGATTAGGGTGAC
TATTAAGAGGCCAAAAGAGGCTACTGTACCTTGTGGATCCCGGATGGGTA
TGGGGGACAAGCTTGACTAN
AATACAGTGTGAGGCCTGGCGGCCGCCTGTTTCAAACTAGAGGTGACCTA
TAGAATTTCCACAAAAATCTGCTGTGGGCACTGGTTCACACCTGGCCCGA
TCCCCGAATCCCACATTCCCATCACTTGGGCTCCTGAACAGTGTGTCTAC
AGCCCGCACGACACCAGATCCAGCTGGAAACGGAAACATCAGTTTCTGTT
TTCAAAATGTTGAATGGCTTCTGCCAGCAATGTGTCTCACGCCCGCAGCC
ATAAAGCCCGGCAAAGAAATAAGTTGGCTGTCATAATGTCTGTAGTGTAT
TCTAACTCAGAAATGTTTTTATCCATCCAACCATAAGAACTGCTCCATAA
ACGGTGTTACCGCTGCAAGACAGAACGCTATCGAGCTGTTTTATGTTGTG
TGGCAGAAGAGGGCAATAGGGATGTGTTCACGGTATCGGGAACAGGAAAC
AGATGACCAAACGTTGCTTTCTGCGGAATACCAATTGTGTTTAAAAAGGA
ACGAGCTGCCATGTTGGTGCCAGCTCATAATTTAACACGGAACCAGGACT
CGCAAATTTATGGCCACCTACTTTTTGTACTACAAATTCCGGTGAGGATC
ATTTTTCCCCCCTCTTAGTATATTTAAGTGCCTAAACTTCTCCTTAAAAC
CCCAATACCTGCGTTTATTATTCTAAACTAGGGTATTCCCGGCCCTTACC
AATTTTGTCCAAGCTGTGTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_f03.b1 MSMg01no120_f03.b1 CHROMAT_FILE:
MSMg01no120_f03.b1 PHD_FILE: MSMg01no120_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:43 2005
         (485 letters)



>mm_chr2_178417271_178418155
          Length = 885

 Score =  891 bits (461), Expect = 0.0
 Identities = 479/485 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggagccttctttggcttgtgaccatattaaatacaatttgctactaaaggcacctgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggagccttctttggcttgtgaccatattaaatacaatttgctactaaaggcacctgata 260

                                                                       
Query: 61  catttagctagatattggaaggggtagaagaaagatctattgagataaagtttcggacag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 catttagctagatattggaaggggtagaagaaagatctattgagataaaggttcggacag 320

                                                                       
Query: 121 cttgtcgaatgcgaagccgtcacatgctgcacggtgttacacaagtcaggaagacctgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgtcgaatgcgaagccgtcacatgctgcacggtgttacacaagtcaggaagacctgag 380

                                                                       
Query: 181 gaagattctcaaacctcttaaatagtgttttcttctccatttctgcatcagaaatatgga 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagattctcaaacctcttaaacagtgttttcttctccatttctgcatcagaaatatgga 440

                                                                       
Query: 241 gcacagccgttctctttaacgcagattttaataggagatattcgtctgcattgctccgta 300
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 441 gcacagccgttctcattaacgcagattttaatagaagatattcgtctgcattgctccgtg 500

                                                                       
Query: 301 gtttctgcttgcatggggctgccatttacaacaagtgtaatagcatctttgagcttttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttctgcttgcatggggctgccatttacaacaagtgtaatagcatctttgagcttttta 560

                                                                       
Query: 361 attaaaaattaattaggagatttaagcacaaactcattgggggttactgtacaataacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attaaaaattaattaggagatttaagcacaaactcattgggggttactgtacaataacat 620

                                                                       
Query: 421 gtttacaaaattaggtctgggctttttgttccagctaagtgtttcaatcaattctgtgtc 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttacgaaattaggtctgggctttttgttccagctaagtgtttcaatcaattctgtgtc 680

                
Query: 481 tatta 485
           |||||
Sbjct: 681 tatta 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no120_f03.g1 MSMg01no120_f03.g1 CHROMAT_FILE:
MSMg01no120_f03.g1 PHD_FILE: MSMg01no120_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:43 2005
         (243 letters)



>mm_chr2_178561170_178561812
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgctgtgggcactggttcacacctggcccgatccccgaatcccacattcccatcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctgctgtgggcactggttcacacctggcccgatccccgaatcccacattcccatcactt 384

                                                                       
Query: 61  gggctcctgaacagtgtgtctacagcccgcacgacaccagatccagctggaaacggaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gggctcctgaacagtgtgtctacagcccgcacgacaccagatccagctggaaacggaaac 324

                                                                       
Query: 121 atcagtttctgttttcaaaatgttgaatggcttctgccagcaatgtgtctcacgcccgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atcagtttctgttttcaaaatgttgaatggcttctgccagcaatgtgtctcacgcccgca 264

                                                                       
Query: 181 gccataaagcccggcaaagaaataagttggctgtcataatgtctgtagtgtattctaact 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 263 gccataaagcccggcaaagaaataagttggctgtgataatgtctgtagtgtattctaact 204

              
Query: 241 cag 243
           |||
Sbjct: 203 cag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)