BAC Information

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BAC

Clone NameMSMg01-120F21
Chromosome2 (Build37)
Map Location 155,932,419 - 155,933,059
singlet/doubletsinglet
Overlap geneCpne1, Rbm12
Upstream geneItch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4
Downstream geneNfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120F21.T7 (MSMg01no120_f21.b1)MSMg01-120F21.TJ (MSMg01no120_f21.g1)
ACCAG330753AG330754
length7041,138
length of high quality
(start - end)		645 (50 - 694)---
definitionCHROMAT_FILE: MSMg01no120_f21.b1 PHD_FILE: MSMg01no120_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:46 2005CHROMAT_FILE: MSMg01no120_f21.g1 PHD_FILE: MSMg01no120_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGTCCTGCCAGGATGTAATGTAATGAGAGCAGAAAAACCA
AGTAAGAACAAACACAAGGTATGGGCCTGGGCACGTCTCCCACACATTAG
AGAACTGAGTTTCCTAACTCTTTTTTCCCTTTCAAACACAAGAAGATACC
CCACGGCCATCCTGAGAAGGTCAAATTTAGGCTAGCCAGTCATACTCAAG
GTTCCAAAACCATTAACAATAAGGAAAATTCTTATTACATTAAGAAATGT
TGAGGGCTGGAGAGATGGCTCAGTGATTAAAGAGCACTGACTGCTCTTCC
AGAGGTCCTGAGTACAATCCCCACCAACCACATGATGGCTCACAACCATC
TCTAATGAGACCTGATGAGTGTACTCACATATAACAATAAATAAATCTTT
TTATAGCCCTGGCTGTTCTAGAACTCACTCTGTAGACCAGGCTGGCCTCA
AACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCG
TGCACCACCACGCCCGGCACAATAAATAAATCTTAAAAAAAAAAAAAAGG
GGGGGGGGAGAAATGTTGAAAGCCCAGCTGATCTGCGTAAACGTGTAGTT
TAACTTTTGTGTTCAACTTACAGAACAGAGCCAATCTACATACAAGATAC
ACCC

NCGGCGGAGAGGAGAAGAAGTGGGCGGGGANAGAAAAAAAAANNTTTCAT
TACGTGGAGCCNAGACNGGGGNNGAAAANNAAAAAATGATAACCCAAAAA
AAAGGGGGAAGGATATGAGGAAGGAGGAAGGTGTGTACGCAGNTAGGAGG
ATATTTNTCTGGTNGTTGTCCGCCCNGGTGTGANGTTCCGGCGCGATCAT
GTAAATGATATGATGGAGATAGTGGTGTTCGAGGAAATGAAGTAATGGTG
TGATGGAATGTGTCGAGATAGAGGACAGACAAGGCGACCAGCGCGGGATC
ACGTTGCAGGCATTATAGAAGATTAATTGGAGAATAGAGAGAGAAAAGGA
GAATGAATTAGAGAGAAGAGAAGGAAATCAATATATATACATTAATTATT
GAGAGAACACTCAATAGGGAGTTAGTGGTAAGAGAGAGAGAGAGAGTTTT
TTTTTTTTTTTTTGAAGATAAAGAGAAATGGAAAGTTATTTATATACTAT
GATTTATTTATTTTTTTGTGACTCCCCGCACCCTAACCCACAAGAGAGAG
AAGATGAATGAGAGAAGGAAGGAGGGGAGAGTACGGAGAGCGTGATATAA
GATATAGGATAAATAGTGTATATGAGCAAGAAGAAAAAAAACAGAGAGGA
GTGTGTGTTTTCTACATAGCGATCTATTGATTATGGACCTATGTATCGCA
TCGTTTCGTAGGAGGTGAGTGTTGTGACTGTATCGCCGTATAATGTTGAG
ACACGGGCGGCAGAAATATTGACCTGTGAGGCGATAAGAGAGACATAGAG
GAGTAAATAAAACTAGAGTAATGCAGAATGAAGTGTAGAGCGACGGGAAG
ATTTGCGGTGCGGCGATACACGAGAGGTGGATGAGCTACATATTGTGTAA
GATCGAGTCGGTGATTCTGGAAGGGAAGGTCACAGAGAATATAGAGAAAG
CATAAGAGATCAAAATTAAATGATATATCAATAGCAAGATTGATAAAATA
CACGACTGTAATTGTCATACGGATGAGTGATTTAATCAGATAAAACAATA
ACATATTATATTATAAAATGAGTAAAGAGGCACACAGTCGCGACCGCGGA
TGCAATATTGGATTGTGCGCAGCGCCGTGATAGTGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_f21.b1 MSMg01no120_f21.b1 CHROMAT_FILE:
MSMg01no120_f21.b1 PHD_FILE: MSMg01no120_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:46 2005
         (645 letters)



>mm_chr2_155932215_155933259
          Length = 1045

 Score = 1232 bits (637), Expect = 0.0
 Identities = 640/641 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtcctgccaggatgtaatgtaatgagagcagaaaaaccaagtaagaacaaac 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtccagccaggatgtaatgtaatgagagcagaaaaaccaagtaagaacaaac 264

                                                                       
Query: 65  acaaggtatgggcctgggcacgtctcccacacattagagaactgagtttcctaactcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaaggtatgggcctgggcacgtctcccacacattagagaactgagtttcctaactcttt 324

                                                                       
Query: 125 tttccctttcaaacacaagaagataccccacggccatcctgagaaggtcaaatttaggct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttccctttcaaacacaagaagataccccacggccatcctgagaaggtcaaatttaggct 384

                                                                       
Query: 185 agccagtcatactcaaggttccaaaaccattaacaataaggaaaattcttattacattaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agccagtcatactcaaggttccaaaaccattaacaataaggaaaattcttattacattaa 444

                                                                       
Query: 245 gaaatgttgagggctggagagatggctcagtgattaaagagcactgactgctcttccaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaatgttgagggctggagagatggctcagtgattaaagagcactgactgctcttccaga 504

                                                                       
Query: 305 ggtcctgagtacaatccccaccaaccacatgatggctcacaaccatctctaatgagacct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtcctgagtacaatccccaccaaccacatgatggctcacaaccatctctaatgagacct 564

                                                                       
Query: 365 gatgagtgtactcacatataacaataaataaatctttttatagccctggctgttctagaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatgagtgtactcacatataacaataaataaatctttttatagccctggctgttctagaa 624

                                                                       
Query: 425 ctcactctgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctcccgag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctcactctgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctcccgag 684

                                                                       
Query: 485 tgctgggattaaaggcgtgcaccaccacgcccggcacaataaataaatcttaaaaaaaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgctgggattaaaggcgtgcaccaccacgcccggcacaataaataaatcttaaaaaaaaa 744

                                                                       
Query: 545 aaaaaggggggggggagaaatgttgaaagcccagctgatctgcgtaaacgtgtagtttaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaaaaggggggggggagaaatgttgaaagcccagctgatctgcgtaaacgtgtagtttaa 804

                                                    
Query: 605 cttttgtgttcaacttacagaacagagccaatctacataca 645
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cttttgtgttcaacttacagaacagagccaatctacataca 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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