BAC Information

Click to search

BAC

Clone NameMSMg01-120I01
Chromosome2 (Build37)
Map Location 42,364,073 - 42,364,549
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC625094
Downstream geneLOC100041228
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120I01.T7 (MSMg01no120_i01.b1)MSMg01-120I01.TJ (MSMg01no120_i01.g1)
ACCAG330855AG330856
length701695
length of high quality
(start - end)
480 (78 - 557)33 (79 - 111)
definitionCHROMAT_FILE: MSMg01no120_i01.b1 PHD_FILE: MSMg01no120_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:57 2005CHROMAT_FILE: MSMg01no120_i01.g1 PHD_FILE: MSMg01no120_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGC
GGAATTCTTTAATCTTTCCCCAAATTCAGAGTTTTGTTAAACACTAATTA
TAGTATAACATAAATCTTTATTTTCTACATTCTTGAAATCCACTATAATT
ACTTAAAAAACATTAATTTGATAGAAATATCTCATCTCATTCTATCTACA
TCTGTTATGCTAAACTAAGGTGTAGCACATAGTTACCACCACTAATGTGG
GAAATGCTATGTTTTGCCATTATCAATAAATGGCAACAATCATTTATGCT
GTGCAAGTCCTTTTATAAGAGATTATAATTGTCTTAATGGAGAGAGACAT
ATTTTGTAGTTCAATAAGAGTTCACTTTAAGCGAGTTCAAATATTTTTTA
AATATGCACAATATATACATATATATTTCAACAAGCACACACATATACAT
ACACATACCTAGACACATAAAGACACATACATATCCATGACTATGCTGCT
AATCTAGTTGCAATGTATGTATTATAGATAGTCTATTGTAATATAAAATC
ACACTATGGCATTTGGGAGTAATTTTGATGTTTATACTGGCAATATCTAA
ACCCCCAAACACATATATATTTCCATATAACATACATATATTTACCATAT
TATCATATTATAATATATGTCTATTATATATATTCTGCTTCCCTTTTAAT
A
NCCCATGATAGGGAGGCTGGNGGNGTCTGTTTTCAAACCCGANGAANANN
GAGGTTTCGNGAGGCGAGGGNAGGAGGAGGAGAGGGGGGGGGGGGAGCAG
GGCAGGGCCCCGGGGACAGANCGAGAGGGAAAAACAAAAACCGAAAAAAA
AGCAGGCCGCGCGCCGAACANCAAAAGAAAGAAACGGAAGACAGGACGCA
AACAGGAGACCCGAGGCAGCCAGGCGCCCCCAACCGCACTGAACACACCG
AAGCACGGAACCCAAGGGGGGGACAGGACGAACNCCCACCNACAAAAGGC
CATTTTTTTTTTCTGNGCCGACAAGAGGGAACCGGCGCCAGGGAGGATGA
CCCCCCCCCCCCCGCGGCAAGAAAGAGAACGGAAAGAAGACCCCCAGCCC
ACAGAACAAAGACCGCGACCCCCCCCGGACGAAGAGCACCGCGAAAAAGG
GGGAGACAAAAGGCCNAGCACCCGGGGACACACGGCCGACCCCAGAGAGA
CGCAAGGCCGAAGACCAAAGAGAGACCCGCGCGCCCACACCAAAACCAGC
CAACCCGGGCCAAACAACGCAAAAGGGCGAGGGACACGCGAAAACCAACG
AAAGCGCACGGGAAGCCACCGGGCAAACCCGGGGCCAAACCCCCCCCCGT
TTTTTTTTTTTTTCCGGAGGGCCAGAGGCCCAGTGCCCCGGGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_i01.b1 MSMg01no120_i01.b1 CHROMAT_FILE:
MSMg01no120_i01.b1 PHD_FILE: MSMg01no120_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:57 2005
         (480 letters)



>mm_chr2_42363873_42364753
          Length = 881

 Score =  816 bits (422), Expect = 0.0
 Identities = 464/478 (97%), Gaps = 2/478 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agag-ttttgttaaacactaattatagtataacataaatctttattttctacattcttga 59
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 201 agagtttttgttaaacactaattatagtgtaacataaatctttattttctacactcttga 260

                                                                       
Query: 60  aatccactataattacttaaaaaacattaatttgatagaaatatctcatctcattctatc 119
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 261 aatccactataattacttaaaaaactttcatttgatagaaatatctcatctcattctatc 320

                                                                       
Query: 120 tacatctgttatgctaaactaaggtgtagcacatagttaccaccactaatgtgggaaatg 179
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatctgttatgctaaactaaggtatagcacatagttaccaccactaatgtgggaaatg 380

                                                                       
Query: 180 ctatgttttgccattatcaataaatggcaacaatcatttatgctgtgcaagtccttttat 239
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatgttttgccattatcagtaaatggcaacaatcatttatgctgtgcaagtccttttat 440

                                                                       
Query: 240 aagagattataattgtcttaatggagagagacatattttgtagttcaataagagttcact 299
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aagagattataattgtcttaatggagagagacatattttgtagttcaataggagttcact 500

                                                                       
Query: 300 ttaagcgagttcaaatattttttaaatatgcacaatatatacatatatatttcaacaagc 359
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaagcgagttcaaatattttt-aaatatgcacaatatatacatatatatttcaacaagc 559

                                                                       
Query: 360 acacacatatacatacacatacctagacacataaagacacatacatatccatgactatgc 419
           ||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 560 acatacatatacatacacatatatagacacataaagacacatacatatccatgactatgc 619

                                                                     
Query: 420 tgctaatctagttgcaatgtatgtattatagatagtctattgtaatataaaatcacac 477
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggctaatctagttgcaatgtaggtattatagatagtctattgtaatataaaatcacac 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 881
Length adjustment: 10
Effective length of query: 470
Effective length of database: 871
Effective search space:   409370
Effective search space used:   409370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)