Query= MSMg01no120_i03.b1 MSMg01no120_i03.b1 CHROMAT_FILE:
MSMg01no120_i03.b1 PHD_FILE: MSMg01no120_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:58 2005
(141 letters)
>mm_chr2_42363852_42364395
Length = 544
Score = 201 bits (104), Expect = 1e-56
Identities = 134/144 (93%), Gaps = 5/144 (3%)
Strand = Plus / Plus
Query: 1 ctttaatc-ttcattaaattc-gag-ttttgtt-aacactaattatagtataacataaat 56
|||||| | |||||||||||| ||| ||||||| ||||||||||||||| ||||||||||
Sbjct: 201 ctttaaactttcattaaattcagagtttttgttaaacactaattatagtgtaacataaat 260
Query: 57 ctttattttctacattcttgaaatccactataattacttaaaaaacattaatttgataga 116
|||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 261 ctttattttctacactcttgaaatccactataattacttaaaaaactttcatttgataga 320
Query: 117 aatatctcatctcanttctatcta 140
|||||||||||||| |||||||||
Sbjct: 321 aatatctcatctca-ttctatcta 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 544
Length adjustment: 8
Effective length of query: 133
Effective length of database: 536
Effective search space: 71288
Effective search space used: 71288
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no120_i03.g1 MSMg01no120_i03.g1 CHROMAT_FILE:
MSMg01no120_i03.g1 PHD_FILE: MSMg01no120_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:58 2005
(506 letters)
>mm_chr2_42473688_42474593
Length = 906
Score = 911 bits (471), Expect = 0.0
Identities = 498/507 (98%), Gaps = 1/507 (0%)
Strand = Plus / Minus
Query: 1 cagggccaggaggcaggagagggtgggttggggagcagggcagggctttggggatagcat 60
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 578 cagggccaggaggcaggagagagtgggttggggatcagggcagggctttggggatagcat 519
Query: 61 ttgaaatgtaaataaataaaatatctaaaaaaaatctttccctgccactaatttcaatat 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttgaaatgtaaataaagaaaatatctaaaaaaaatctttccctgccactaatttcaatat 459
Query: 121 aaagaaacttaattcattactcaattattataccctatgtatttatgtgcccccaacctc 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 458 aaagaaacttaattcattactcaattgttataccctatgtatttatgtgcccccaacctc 399
Query: 181 actttatacatcgaaacattgtttccaatgtgtggatatgatgaactttcaccttttaaa 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 398 actttatacatcgaaacattgtttacaatgtgtggatatgatgaactttcaccttttaaa 339
Query: 241 ggtcattaatgatgactgttcttacaaaagggatcctgtgtcatggaggatgattcaagt 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ggtcattaaagatgactgttcttacaaaagggatcctgtgtcatggaggatgattcaagt 279
Query: 301 ggtaaagtggcaagcatgagacctgaaataagatccccagccctcagatcaatgtctgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggtaaagtggcaagcatgagacctgaaataagatccccagccctcagatcaatgtctgct 219
Query: 361 accctctctgtacttaaagcactggatataatggggagactaatggttttctctttggcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 accctctctgtacttaaagcactggatataatggggagactaatggttttctctttggcc 159
Query: 421 actcggtctaccccaaagtgccgcaagctttaagatcattgagaga-cctgtctcaaaaa 479
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 158 actcggtctaccccaaagtgccgcaagctttaagatcattgagagaccctgtctcaaaaa 99
Query: 480 acaaaaccaaccaaccaaacaaataaa 506
|||||||||| ||| ||||||||||||
Sbjct: 98 acaaaaccaaacaaacaaacaaataaa 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
