MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-120K24
Chromosome	2 (Build37)
Map Location	86,547,316 - 86,547,454
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1
Downstream gene	Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136
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BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-120K24.T7 (MSMg01no120_k24.b1)	MSMg01-120K24.TJ (MSMg01no120_k24.g1)
ACC	AG330992	AG330993
length	804	762
length of high quality (start - end)	---	131 (133 - 263)
definition	CHROMAT_FILE: MSMg01no120_k24.b1 PHD_FILE: MSMg01no120_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:13 2005	CHROMAT_FILE: MSMg01no120_k24.g1 PHD_FILE: MSMg01no120_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:13 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CTATAGATCCAAATATTAAAAAACCCCCCCCCTATACCCTCTGTTCTCGC TGCGGGCCCTTATAATCGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXGCCGCGGAATTCTTTACTTACCCCTGTGACACGTTTTTAAATG CTATATTTAGTAACTCTGTAATCTAGATTCTCGACATCTATTACTTTACT GGACAGAGAAACAACTATCACATGCAATATCGTCACAGATTCTTATATCT CTGTGTACGTAGCTATGTGGTCAAATTGCACCATATGCTTCGCCTTAAAT CAATGTGGCAATGATATGACAGTGCCATCGAAAGTATTGAAACCTATGAA ATTTTGAAGAAAAGAATATGGTGGTCAACAACACATGTATATTATATCAC AAATCATGAAGCTTAGATTTATCGCGGTGCTATTTGCAAAATAATGACAT AGATTATGGGTGTATGAAATACTTGCCGAATATAAGATAGATTACATTAT CCAAAATGTGGGGGTAATAAAACAAAGTCAACCTATATAGAAAGACAAAT TATACGATAGTTTACCTTTAGCATTAGGTACCTCCCAACAAATGCGGTAT AAAAAAGGACAACTATATCCGTTTTGTGAGCCCCCTTGAAATGGAGCGGG CGGTAAAATAAAGAGGGCTGAACGGCTGGGATCAGTGCGCGATGCGTCCA AACATGTAGCTGTGGGCCGGACACAGCACAATTCGGTGGGCGTTTATCAA CACCGGTTGTGGGTGCGGGACGCGATTCCTAAATGCAAATCAACGTTCTC GATA	TAAAAAATATTTTTATTTATTAGCCAATTTTTTATTCTTCCCCTTTCCAC CACCCAACNAACCTATGCTATGGGTGGCCTGGCGGCGCCTGGTCAAAAAA TTTAGGTGAACTATAGAATTCCCGCGGAATTATTACATAACAAATAATTA AATTGTGTGCAGGTATTATTAATTTATTGTACAGAAAGTCTCATACTTGA TAATTACTAAAGATAAGATGTTGATAGGTGTGTATTTGTCTTATAGTTCA TTGCATTTTTATTTACGCCTAACCCAAAAGACAATCAAAATTTAAACAAG CAAATACCACATTATGTCTCTGATGTATTTGAATACTTCTAGACAATTAA TATACATTAGGATAACGAACTACTAATTAATAATAATTGCTGATACAACT GAGAAATGTCTTGTTTTCCTGCATTTATTACATCAAAATATAAAAACACA TATTCGCGACTATAACTATGACCGATTTTTCCTTATATTCTACCGAACTC TATATACTTCCCTTGAAATACATCTATATATCACTCCCCCCTAACCCCCC CCACCCTATACACACATGCAACGCTCTACCTATTCTTTTTATAAGAAAAA TTAATTATTTCACGACCCGAGAATATAGCTTCGATTTATCGCGGTATTGA AATGAAAAAAAATACCGCGCTTCAAGAGCTGGTATACCAAAAGGTTGTCC AAATAAATATCTTTTTTTCTAGGTTTATAGGGTTCCTAAAAACCCCTTGG CATGATACAAAA
quality values	Open. Hide. 9 9 9 9 8 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 11 11 13 11 14 11 10 8 8 8 8 8 6 7 10 8 9 9 9 9 8 8 8 8 6 6 8 8 6 6 6 8 8 13 15 15 15 13 9 10 8 7 10 10 8 8 8 8 8 10 12 15 22 21 11 11 11 13 16 19 16 16 18 24 32 37 28 24 24 15 17 9 12 9 10 10 9 9 9 9 9 15 14 11 11 11 11 13 22 23 18 16 16 13 20 22 25 23 11 11 11 11 12 16 15 16 13 11 11 10 8 8 8 8 8 10 21 24 37 39 43 43 39 31 23 16 11 11 12 12 14 14 21 23 14 10 9 8 8 8 8 8 15 15 11 8 8 8 8 6 6 6 13 10 11 8 8 9 9 9 12 9 9 9 12 9 11 11 11 11 12 12 26 26 18 17 11 8 8 6 6 8 8 8 10 10 11 10 9 9 9 11 15 19 16 19 19 19 17 20 11 11 10 13 10 10 12 12 9 10 9 8 10 8 8 12 10 10 8 8 8 9 9 8 8 6 6 8 8 10 10 10 8 8 8 8 8 8 8 12 11 13 15 15 12 13 15 16 11 11 11 16 15 9 10 10 10 10 10 11 11 8 10 8 8 8 8 10 11 11 13 16 14 11 12 8 8 8 8 8 11 8 8 8 8 9 12 12 11 11 11 12 18 12 12 10 17 19 12 9 9 10 16 21 19 16 11 11 16 11 11 11 18 13 10 8 10 8 12 10 11 11 11 11 11 12 12 11 11 11 16 16 14 13 13 13 13 13 14 13 12 11 12 13 14 15 15 19 14 12 12 11 11 12 12 12 11 8 10 10 12 15 19 12 14 15 16 13 12 12 12 10 12 15 15 15 16 15 14 18 10 8 8 10 8 8 10 14 12 18 13 12 8 8 8 8 8 8 8 9 9 10 10 10 10 9 9 10 10 10 10 10 10 10 11 12 16 15 14 14 15 14 14 17 24 26 15 12 10 10 10 13 11 12 9 9 8 8 8 8 12 13 16 20 21 16 12 11 11 11 11 11 11 10 10 9 10 15 10 10 8 8 8 9 8 8 8 8 8 8 8 8 10 10 10 11 9 8 8 8 8 8 8 8 10 10 10 10 10 10 10 9 9 9 10 10 10 11 11 9 10 10 10 8 8 8 10 10 8 13 11 13 11 12 11 11 11 12 10 8 8 7 7 6 11 11 11 13 13 8 6 6 6 8 6 9 10 12 23 16 10 8 8 8 8 8 8 8 6 7 10 8 15 15 12 15 11 11 11 13 11 9 9 10 9 9 8 8 8 8 12 19 14 8 8 8 8 8 12 8 10 10 11 10 11 11 11 10 11 13 13 10 10 15 15 15 11 10 13 8 8 6 6 8 8 8 8 9 9 8 13 8 8 7 7 8 8 8 10 8 8 8 8 8 6 12 7 6 6 8 8 8 10 15 9 10 10 9 11 12 11 11 16 10 9 9 9 10 10 11 11 11 11 11 11 11 11 11 10 11 10 8 8 6 6 8 8 8 8 8 9 15 13 12 15 10 9 8 8 8 8 8 11 10 8 8 6 6 6 8 8 11 8 8 8 8 10 8 11 10 8 8 8 8 8 12 8 8 8 8 8 8 6 6 8 11 9 10 10 10 13 11 12 12 12 11 11 9 9 9 11 11 9 12 8 10 6 6 12 8 9 10 10 8 11 6 6 6 7 7 11 11 12 11 10 10 8 8 8 8 6 7 6 6 8 8 8 8 8 8 9 10 11 13 16 15 11 11 11 15 13	Open. Hide. 8 8 15 19 27 23 6 6 8 8 8 7 11 12 11 11 9 10 9 9 9 9 7 8 8 12 10 10 15 15 18 17 11 6 6 7 6 8 8 9 8 10 8 8 8 8 6 6 6 6 8 6 6 8 8 8 6 3 0 3 8 6 9 9 9 9 9 8 8 9 9 12 11 9 10 10 11 12 22 23 18 11 11 8 12 7 9 9 15 11 9 9 9 12 12 13 13 13 16 11 16 13 15 11 12 12 16 19 10 10 11 12 16 12 12 23 12 8 8 8 8 8 14 22 37 30 20 15 15 8 8 8 15 17 37 28 28 28 31 31 34 33 31 31 31 24 28 32 24 20 23 34 21 19 9 9 9 12 17 15 17 17 26 26 33 33 36 33 33 33 33 33 33 33 33 34 26 26 17 19 25 43 32 29 24 24 15 20 28 26 33 32 41 39 35 35 35 37 37 25 15 15 24 20 26 26 35 35 32 37 32 37 32 26 24 12 12 12 24 25 39 44 43 39 32 32 26 17 17 17 17 18 20 31 31 30 24 14 14 19 25 14 9 9 9 12 16 28 30 25 28 23 18 11 19 19 34 32 30 28 15 12 11 11 11 11 11 11 13 13 12 10 8 8 10 19 19 23 13 13 9 9 9 9 10 10 9 8 8 8 8 8 8 8 8 10 17 16 16 15 22 19 20 20 17 21 15 12 15 12 12 12 12 18 12 12 12 24 24 37 37 32 28 28 28 28 30 28 28 32 28 28 28 29 33 36 30 36 26 28 12 12 11 15 15 15 13 14 13 21 21 39 24 25 12 11 11 21 11 12 12 12 12 10 10 8 8 8 7 9 10 10 19 23 23 19 16 9 10 8 8 8 8 10 11 12 12 13 24 18 12 15 12 12 12 12 11 11 10 11 10 9 9 9 12 10 9 8 8 8 11 11 16 14 14 14 17 15 16 12 11 11 17 18 23 23 24 19 15 15 11 11 11 12 16 17 28 31 31 17 19 19 16 16 12 11 11 16 19 24 21 23 15 15 11 11 10 13 21 19 26 26 28 21 14 10 10 10 13 13 12 8 8 8 10 14 15 16 16 27 31 43 39 29 25 15 15 13 22 19 19 16 16 10 9 8 8 8 8 8 8 13 15 15 21 15 21 16 20 15 10 10 10 15 13 19 21 15 12 12 11 11 11 12 11 11 12 12 12 16 10 10 9 8 10 8 8 10 10 12 13 12 14 15 19 14 12 10 10 8 8 8 8 8 8 12 15 24 24 28 23 19 18 15 14 12 21 18 18 16 11 10 9 8 8 8 10 10 8 10 12 10 10 11 11 11 11 15 28 17 16 11 10 8 8 6 7 7 10 11 10 11 8 8 8 12 10 16 15 8 8 8 8 8 8 8 8 8 8 8 10 10 13 13 10 17 10 9 6 8 8 8 8 8 8 8 8 9 9 9 9 9 9 9 8 8 8 8 8 10 10 10 10 10 12 11 11 12 12 10 10 6 6 6 6 8 6 8 8 8 8 8 10 12 10 10 10 10 10 11 11 17 10 9 9 8 8 8 8 8 10 10 10 11 9 9 9 8 10 8 8 9 9 12 12 11 11 9 8 8 8 8 10 10 17 17 14 14 12 14 11 10 9 9 9 9 9 10 11 11 11 11 11 11 12 11 11 11 12 10 8 8 8 8 8 9 9 15 13 12 10 10 9 9 9 9 9 9 9 11 11 11

Alignment Information

BAC End 1	BAC End 2
	Query= MSMg01no120_k24.g1 MSMg01no120_k24.g1 CHROMAT_FILE: MSMg01no120_k24.g1 PHD_FILE: MSMg01no120_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:13 2005 (131 letters) >mm_chr2_86547124_86547654 Length = 531 Score = 226 bits (117), Expect = 3e-64 Identities = 130/139 (93%), Gaps = 8/139 (5%) Strand = Plus / Plus Query: 1 ttacataacaaata--------attaaattgtgtgcaggtattattaatttattgtacag 52 \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 193 ttacataacaaatacttttggaattaaattgtgtgcaggtattattaatttattgtacag 252 Query: 53 aaagtctcatacttgataattactaaagataagatgttgataggtgtgtatttgtcttat 112 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 253 aaagtctcatacttgataattactaaagataagatgttgataggtgtgtatttgtcttag 312 Query: 113 agttcattgcatttttatt 131 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 313 agttcattgcatttttatt 331 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.34 0.600 1.10 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 2, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 7 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 131 Length of database: 531 Length adjustment: 8 Effective length of query: 123 Effective length of database: 523 Effective search space: 64329 Effective search space used: 64329 X1: 7 (13.9 bits) X2: 517 (999.5 bits) X3: 517 (999.5 bits) S1: 7 (14.4 bits) S2: 7 (14.3 bits)

BAC End 1

BAC End 2

Query= MSMg01no120_k24.g1 MSMg01no120_k24.g1 CHROMAT_FILE:
MSMg01no120_k24.g1 PHD_FILE: MSMg01no120_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:13 2005
         (131 letters)



>mm_chr2_86547124_86547654
          Length = 531

 Score =  226 bits (117), Expect = 3e-64
 Identities = 130/139 (93%), Gaps = 8/139 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacataacaaata--------attaaattgtgtgcaggtattattaatttattgtacag 52
           ||||||||||||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ttacataacaaatacttttggaattaaattgtgtgcaggtattattaatttattgtacag 252

                                                                       
Query: 53  aaagtctcatacttgataattactaaagataagatgttgataggtgtgtatttgtcttat 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 253 aaagtctcatacttgataattactaaagataagatgttgataggtgtgtatttgtcttag 312

                              
Query: 113 agttcattgcatttttatt 131
           |||||||||||||||||||
Sbjct: 313 agttcattgcatttttatt 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

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BAC End Information

Alignment Information