Query= MSMg01no120_l04.b1 MSMg01no120_l04.b1 CHROMAT_FILE:
MSMg01no120_l04.b1 PHD_FILE: MSMg01no120_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:14 2005
(568 letters)
>mm_chr2_96184222_96185189
Length = 968
Score = 1007 bits (521), Expect = 0.0
Identities = 552/565 (97%), Gaps = 6/565 (1%)
Strand = Plus / Plus
Query: 9 ttcaatactttcccttataaaggtggaggagtaccctattgtcagcaggctacactgtaa 68
||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttcaatactctcctttataaagctggaggagtaccctattgtcagcaggctacactgtaa 264
Query: 69 attgaataaatagtattttttaaacactatttaataaatcgtggggataataagtattgt 128
|||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||
Sbjct: 265 attgaataaatagtattttt-aaacactatttaataaatagtggggagaataagtattgt 323
Query: 129 tattatttgaagggtaatttactacttt-----cacttgtaatcactttatcaaagtgtc 183
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 324 tattatttgaagggtaatttactacttttgattcacttgtaatcactttatcaaagtgtc 383
Query: 184 attcagtaagaactatttgatgcatcaaatgtcttataggccttttaaaagagattttca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attcagtaagaactatttgatgcatcaaatgtcttataggccttttaaaagagattttca 443
Query: 244 ttatcaaaattgttaagaggatttaccaaatagaacattttggcatccaaagtgtttcca 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 ttatcaaaattgttaagaggatttaccaaatagaacagtttggcatccaaagtgtttcca 503
Query: 304 gccatataagcattagaccatacacaagcacattgggaacaagcaaagaccagaatgtga 363
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 gccatataagcattagaccatacacaagcacattgggaactagcaaagaccagaatgtga 563
Query: 364 gtttatccctgcatatgtctgcaataatcctttaccaaatatgtacaacaaagagttcta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtttatccctgcatatgtctgcaataatcctttaccaaatatgtacaacaaagagttcta 623
Query: 424 cgtagtaacatggtcaaatattattttagccttcccttgaacctttgtatctctgtggca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgtagtaacatggtcaaatattattttagccttcccttgaacctttgtatctctgtggca 683
Query: 484 attttagtcacctcattcttcgatttcaaaaaacagagttttatatcatattgaaagact 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attttagtcacctcattcttcgatttcaaaaaacagagttttatatcatattgaaagact 743
Query: 544 ggtgggatatagattgtttcttgag 568
|||||||||||||||||||||||||
Sbjct: 744 ggtgggatatagattgtttcttgag 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_l04.g1 MSMg01no120_l04.g1 CHROMAT_FILE:
MSMg01no120_l04.g1 PHD_FILE: MSMg01no120_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:14 2005
(543 letters)
>mm_chr2_96320817_96321759
Length = 943
Score = 828 bits (428), Expect = 0.0
Identities = 434/436 (99%)
Strand = Plus / Minus
Query: 1 catttccataaacaccaagtaggattttgtaagtcttgttacaagtcttgataacagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 catttccataaacaccaagtaggattttgtaagtcttgttacaagtcttgataacagtga 377
Query: 61 gtcattaaacccctttttgtcaaactgatgtgtcttggaaaacccaaaaaatgtaagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtcattaaacccctttttgtcaaactgatgtgtcttggaaaacccaaaaaatgtaagaga 317
Query: 121 aaaatcatgtaggtggaagcaaatgaattttgcacttaaattgcttttcaaattcctttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aaaatcatgtaggtggaagcaaatgaattttgcacttaaattgcttttcaaattcctttt 257
Query: 181 tataaatggtacctacaccttaaaggaactgcaaaagataattcattcttttttatttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tataaatggtacctacaccttaaaggaactgcaaaagataattcattcttttttatttat 197
Query: 241 ttattttaattggatattttatttatttacattcaaatgttattccgctttcccggtttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttattttaattggatattttatttatttacattcaaatgttattccgctttcccggtttc 137
Query: 301 ccctctagaaaccccctatcacataacttttctccctgcttctgtgaagatgctttccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ccctctagaaaccccctatcacataacttttctccctgcttctgtgaagatgctttccca 77
Query: 361 ctcacccactcatccactaccgcctccctgtcctcgcattcccctacactgggtcattgg 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 76 ctcacccactcatccactaccgcttccctgtcctcgcattcccctacactgggtcatcgg 17
Query: 421 gccttcacaggaccaa 436
||||||||||||||||
Sbjct: 16 gccttcacaggaccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
