Query= MSMg01no120_m03.b1 MSMg01no120_m03.b1 CHROMAT_FILE:
MSMg01no120_m03.b1 PHD_FILE: MSMg01no120_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:18 2005
(497 letters)
>mm_chr2_173389133_173390028
Length = 896
Score = 907 bits (469), Expect = 0.0
Identities = 490/497 (98%), Gaps = 3/497 (0%)
Strand = Plus / Plus
Query: 2 ggaattctctaaatttct-tgtgacatttcccaggcacacacacacatgcactctggagc 60
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctctaaacatccctgtgacatttcccaggcacacacacacatgcactctggagc 261
Query: 61 cccagatgttattggtattttttaattttttccgttttaaatttagaacatatagcaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cccagatgttattggtattttttaattttttccgttttaaatttagaacatatagcaacc 321
Query: 121 aaacaagtcaaggatgatgctgtgggaacacaggacgtgatttcctggggcagatgggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaacaagtcaaggatgatgctgtgggaacacaggacgtgatttcctggggcagatgggac 381
Query: 181 actgggctttcttgttccgtggccagatgtgtactcctagagtgatggaggacagacccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 actgggctttcttgttccgtggccagatgtgtactcctagagtgatggaggacagacccc 441
Query: 241 tttccggatgtcgtgagggctatacacgtgtccccctggccaatgtacatgtcccccgtg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 442 tttccggatgtcgtgagggctatacacgtgtccccctggccaatgtacatgtcccctgtg 501
Query: 301 cccgctctgcagaaagttccaggactcaggcagaaatgccaccctcgagccccccaaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cccgctctgcagaaagttccaggactcaggcagaaatgccaccctcgagccccccaaatt 561
Query: 361 gagctccactcttgaatttttcaagtgacgcatatagcagctatccctgacatttccgca 420
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 562 gagctccactcttgaatttt-caagtgacgcatatagcagc-atccctgacatttccgca 619
Query: 421 gaacacaaaccccggtgttttgccaaatgttaatgggtttctgtgccctccactggctgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaacacaaaccccggtgttttgccaaatgttaatgggtttctgtgccctccactggctgc 679
Query: 481 ctctgtattcaatgcgc 497
|||||||||||||||||
Sbjct: 680 ctctgtattcaatgcgc 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space: 431482
Effective search space used: 431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_m03.g1 MSMg01no120_m03.g1 CHROMAT_FILE:
MSMg01no120_m03.g1 PHD_FILE: MSMg01no120_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:18 2005
(392 letters)
>mm_chr2_173470911_173471702
Length = 792
Score = 617 bits (319), Expect = 0.0
Identities = 322/323 (99%)
Strand = Plus / Minus
Query: 70 aatcgaagaactcaggaggctcaggagttcaaggccagcctcaggtacatgagaccctgt 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aatcgaagaactcaggaggctcaggagttcaaggccagcctcaggtacatgagaccctgt 733
Query: 130 ctcaacagaaaagacaagacagataactagtcttaggggaatgtttgagacacattagca 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctcaacagaaaagacaagacagataactagtcttaggggaatgtttgagacacattagca 673
Query: 190 ccaaaaggacactttctttaattttgttagaaaattaagatggaaataactttcccttcg 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ccaaaaggacactttctttaattttgttagaaaattaagatggaaataactttcccttcg 613
Query: 250 tgtgatttaataacattgaaagtgttttgcacatgtgtgagtggggagatgctgtccgca 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgtgatttaataacattgaaagtgttttgcacatgtgtgagtggggagatgctgtccgca 553
Query: 310 ctgcagtgtgagtattgagctcacatgacggtgtcatgcccagcgctgcttctctttgct 369
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 552 ctgcagtgtgagtattgagctcacatgacggtggcatgcccagcgctgcttctctttgct 493
Query: 370 tctgtttggccatcagcagtgcc 392
|||||||||||||||||||||||
Sbjct: 492 tctgtttggccatcagcagtgcc 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space: 299889
Effective search space used: 299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
