BAC Information

Click to search

BAC

Clone NameMSMg01-121E20
Chromosome2 (Build37)
Map Location 91,307,722 - 91,308,004
singlet/doubletsinglet
Overlap geneLrp4
Upstream genePtprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik
Downstream geneLOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121E20.T7 (MSMg01no121_e20.b1)MSMg01-121E20.TJ (MSMg01no121_e20.g1)
ACCAG331449AG331450
length656714
length of high quality
(start - end)
34 (216 - 249)283 (69 - 351)
definitionCHROMAT_FILE: MSMg01no121_e20.b1 PHD_FILE: MSMg01no121_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:02 2005CHROMAT_FILE: MSMg01no121_e20.g1 PHD_FILE: MSMg01no121_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACGACCCGCGGAATTCTACACTTTCCACACATGCTAATTTTACTATTAG
AGCTTGTTTTACTTAGAGACTGAGCCGTGTGTCCCCTAGGCTAGACCAAA
CTTTTCAGAGGAAGTCTACCCAGGATCTTTCCTCTTCCATGACCTCTTAA
CCACACAGCATGGCACTTGCTTACTTCAGACTGTGCCATGTCCTGGCTGT
AAGGATCTTGGAGACTAAGCCACCAACCATCTTCCTTTCTTTTATGGTCA
CCTGAGACAGGGCCTCATAGGACAAGCTAGTTTGTTACTCACTCTGTATC
CCAAGATAAACTAGAGTTTAAGTCCTTCCCCCAACGACCCCCTAAGTGCA
ACTATTACAGGCACGGGCCGCTCAAGCCCCAAATAAAAAAGAACTACTTC
GCGGGGGCGTGGCGGTACATTATCTTGTATGAAGTAGATAGCATATAAAA
TGGCAAACCATTGTTTGTTGTGCGCACGCCCCTTATTGCCCATACAACTT
GTCTACAATGCCGGAAGTTCAAATTTAAATTTCAATGCCGCTGGGAAAAA
AAATGCAGCAACTTTGCTGTTGCTTCTTTCCCCCCCACCCCCACCCGGTT
TTACAACACCGACTCTTAAAATTTCCCAAAAATAATTAAGGGTCCGGCTC
AACACA
ATGCAGTGGGAGGCCTGGCGGCCGCCTGGTACCGACTAGAGGTGACCTAT
AGAATTTCAAACAACATCTGTCTGTTCACTCCAGCCCTGGCAGCGATCAT
AAAGGGCAGCTTTTCACCCTTTTTGCATAAAAGAAAAGAAAGGAAACGCA
TGCGGACGCAGCCTTCCATGTAAGCATTGAATCGGAATCCTTGAAGGCTG
TTTGCCAGCTACGCTGCAGGCAGCTCTCAGGGCTGCCAGGGCCTTAGGCA
TTTCAACAAGGAACAGGTCTGAGCCCCAGGTGTTTGTGCTCTCTCATAAA
GCCTTTATTCNCTGGATTCATGTTAAGTGGCTCGTAGAACCTTCTTTTTT
ATTTTTGGTCCCACCATGTACCCCTCCCTGATTGACTTGGCGCTTGCTGT
GTAGACCAGGCTAGCCTCAAACTCACAGAGCGCGGTCCACAAGTGCTGGC
ATTCCATTAAACGTGTGTGCCTCCACATCTGGCTTTATTGAATCTTTCTG
AGAGGTTAACCGAGATCTCACCATTTACACCTCCGCTCCCTCAGGCCGGC
TACCTTAGCAGTTTCCCAGTGCTTTCTTTGGAAGGGGAGAAAGCAAACAC
TGACCCGCGTGGTATCAGTGAAACCTTCACCAGTGTTATTTTTACCCTCT
AACACTGCAAAACAGTACAGATCCCACATTTTTTGAGAAATTACCCAAAA
TTTCCTGAAAACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_e20.g1 MSMg01no121_e20.g1 CHROMAT_FILE:
MSMg01no121_e20.g1 PHD_FILE: MSMg01no121_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:02 2005
         (283 letters)



>mm_chr2_91307522_91308204
          Length = 683

 Score =  505 bits (261), Expect = e-147
 Identities = 278/285 (97%), Gaps = 4/285 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctgttcactccagccctggcagcgatcataaagggcagcttttcaccctttttgcat 60
           |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 483 tgtctgttcactccagtcctggcagcgatcataaagggcagcttttaaccctttttgcat 424

                                                                       
Query: 61  aaaagaaaagaaaggaaacgcatgcggacgcagccttccatgtaagcattgaatcggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaaagaaaagaaaggaaacgcatgcggacgcagccttccatgtaagcattgaatcggaat 364

                                                                       
Query: 121 ccttgaaggctgtttgccagctacgctgcaggcagctctcagggctgccagggccttagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ccttgaaggctgtttgccagctacgctgcaggcagctctcagggctgccagggccttagg 304

                                                                       
Query: 181 catttcaacaaggaacaggtctgagccccaggtgtttgtgctctctcataaagcctttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 catttcaacaaggaacaggtctgagccccaggtgtttgtgctctctcataaagcctttat 244

                                                        
Query: 241 tcnct--ggattcatgttaagtggctcgtagaaccttctttttta 283
           |  ||  |||||||||||||| |||||||||||||||||||||||
Sbjct: 243 t--cttgggattcatgttaagaggctcgtagaaccttctttttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)