BAC Information

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BAC

Clone NameMSMg01-121F16
Chromosome2 (Build37)
Map Location 83,928,456 - 84,093,224
singlet/doubletdoublet
Overlap geneLOC383725
Upstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
Downstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121F16.T7 (MSMg01no121_f16.b1)MSMg01-121F16.TJ (MSMg01no121_f16.g1)
ACCAG331489AG331490
length728732
length of high quality
(start - end)
293 (72 - 364)304 (68 - 371)
definitionCHROMAT_FILE: MSMg01no121_f16.b1 PHD_FILE: MSMg01no121_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:06 2005CHROMAT_FILE: MSMg01no121_f16.g1 PHD_FILE: MSMg01no121_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,928,456 - 83,928,746)(84,092,932 - 84,093,224)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCTCTTACCCATTCCCTGCTCTCTCCCAGCACCGCCCTGCCTC
CCGTAGGCAGTATTTAACATGACTGAAGAAGTCCCCACTCTCTTATATAC
TGAGAGTTGCCATTTGTTTAAAAAGAGTAGAAGGCAAAAAAACCCAAACA
AACAAACAAAACAAACAAACAAACAAACCAAAAAACCAAAAAACCAACAA
CAGAAAAGGCCTTTCTCTGTCTATGTTTTGTCAGCTGATGTCAAGTTTTG
ATCTTAAAATTAAAGATGAGTTTCTTGTTAGCCAGAAGGCTCCTAGCAGA
ACTCCCACGTTCTTTATTGCACCCTCCCCCCCCCTGTAACTGGGTCCCTA
GCTAAAAATGTGGTATTCATTCTTTCTTATTTTCTTTTTCTGCCACACAT
TGATGAGGTGAATCTAAAACACCAAAACCAAAACCAAAGCAAATAAAACA
AGAAGCAAGTCTAAAACCAAATGAAAAACTCTGAACCCCAAACAACTGTT
TTATTTCCCTTTAAAGCTGGAAACAATCAGAATGAATACAACCATAACTG
ACATTTACGTGCCTTCTGCATGACTACTTTGATCCTCTTCCATCTAACCT
ATTGCCCAGAACGAATATAAAATCTCCTGTGGGAAAAACCTGAAAGCCAT
TTGAATGCGTGTACCAATTATACTAAAA
TCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGACCATTTGGGAATCCGAGAACTGAATATGCT
GTTAGAGGTGCTGATATTGCAGAAAGGTGGGTCTGGTTGGAGGAAGATAG
TCACGTGGACTCATGTCCTGGGGGCGGTAACTTTCTAGATCCCTCCTGCT
GCTGGTCTCTTCTGTCTCAGGTCTACCGTGGTGTGTACAGCTAAAATCAC
AGGCAAAATAAGTCCTTAAGTTGTTTATGTCAGGTACCCTTCCACAGAGA
TGAGAACACTAACCACGTGTTAATGAGATACAAGTTAGAATATGCACATC
TCAAATATTGTTTTCTTCCCCACACGCATCCACTTAATACAAAAATAAAT
ACATGGATGTTTGAATGAGTGGACAAATTAATAAATTAATGAAAGAGAAA
ATTTGGGGACATATTTGTTCTTGATTTCAAAGCCAGTGAAAGAAAGACCG
AGGCAATAAATAAACCTGATACTAAAAGTTAGTAAAAATAAACTGAGTAA
GTTGCATTGTAAAACTGGCGCTGAACTGTTGGAATATGTGGGCTACTGCA
TGACTATTCAGAAACAACCGACCATATTTCAGGCCCCCTTAAGCACTATT
ATTCCTTGCCTTTCACTCCCAATTTTATGACTTCTGACATCCTCCCCTGA
CCTTTGCCTTTATCACCTTTCATTTCTTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_f16.b1 MSMg01no121_f16.b1 CHROMAT_FILE:
MSMg01no121_f16.b1 PHD_FILE: MSMg01no121_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:06 2005
         (293 letters)



>mm_chr2_83928256_83928948
          Length = 693

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgctctctcccagcaccgccctgcctcccgtaggcagtatttaacatgactgaagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cctgctctctcccagcaccgccctgcctcccgtaggcagtatttaacatgagtgaagaag 260

                                                                       
Query: 61  tccccactctcttatatactgagagttgccatttgtttaaaaagagtagaaggcaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccccactctcttatatactgagagttgccatttgtttaaaaagagtagaaggcaaaaaa 320

                                                                       
Query: 121 acccaaacaaacaaacaaaacaaacaaacaaacaaaccaaaaaaccaaaaaaccaacaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccaaacaaacaaacaaaacaaacaaacaaacaaaccaaaaaaccaaaaaaccaacaac 380

                                                                       
Query: 181 agaaaaggcctttctctgtctatgttttgtcagctgatgtcaagttttgatcttaaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaaggcctttctctgtctatgttttgtcagctgatgtcaagttttgatcttaaaatt 440

                                                              
Query: 241 aaagatgagtttcttgttagccagaaggctcctagcagaactcccacgttc 291
           ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagatgagtttcctgttagccagaaggctcctagcagaactcccacgttc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no121_f16.g1 MSMg01no121_f16.g1 CHROMAT_FILE:
MSMg01no121_f16.g1 PHD_FILE: MSMg01no121_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:06 2005
         (304 letters)



>mm_chr2_84092732_84093435
          Length = 704

 Score =  513 bits (265), Expect = e-150
 Identities = 286/293 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaccatttgggaatccgagaactgaatatgctgttagaggtgctgatattgcagaaagg 60
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgaccatttgggaatctgagatctgaatatgctgttagaggtgctgatattgcagaaagg 434

                                                                       
Query: 61  tgggtctggttggaggaagatagtcacgtggactcatgtcctgggggcggtaactttcta 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 433 tgggtctggttggaggaagatagtcacatggactcatgtcctgggggcggtaactttcta 374

                                                                       
Query: 121 gatccctcctgctgctggtctcttctgtctcaggtctaccgtggtgtgtacagctaaaat 180
           || ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
Sbjct: 373 gacccctcctgctgctggtctcttctgtctcaagtctactgtggtgtgtacagctaaact 314

                                                                       
Query: 181 cacaggcaaaataagtccttaagttgtttatgtcaggtacccttccacagagatgagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cacaggcaaaataagtccttaagttgtttatgtcaggtacccttccacagagatgagaac 254

                                                                
Query: 241 actaaccacgtgttaatgagatacaagttagaatatgcacatctcaaatattg 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 actaaccacgtgttaatgagatacaagttagaatatgcacatctcaaatattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)