BAC Information

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BAC

Clone NameMSMg01-121L24
Chromosome2 (Build37)
Map Location 25,726,882 - 25,727,296
singlet/doubletsinglet
Overlap genenone
Upstream geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1
Downstream geneKcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121L24.T7 (MSMg01no121_l24.b1)MSMg01-121L24.TJ (MSMg01no121_l24.g1)
ACCAG331784AG331785
length703718
length of high quality
(start - end)		429 (69 - 497)303 (62 - 364)
definitionCHROMAT_FILE: MSMg01no121_l24.b1 PHD_FILE: MSMg01no121_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:38 2005CHROMAT_FILE: MSMg01no121_l24.g1 PHD_FILE: MSMg01no121_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGTTCTAAATTTGCGGCGCTATACGACTCCTATTCCGAGAGGAGCCGCG
GAATTCTTCATATCTCCGTGCTGGGCAGGGCAGCCATCAAGTAGCAAGCC
AAAGTGGATCCCAGCTTTGCAGGTGTATGGTGCAATCCTTGGGTCTCGAG
TCCCATGAAGTGCTTGGACAGGATAGTCAGAGATAGATAGCTCCCTGGGA
GCAGAGACAGTTTGGGAGAAAGCATGGTGAGGTTCTGAGCCCAGAAGTTC
CCCTATCCATCTTCTGTTGCTTTAGATGTGGGCAGAGCCACACCTTTAGG
GCCTGACCTGTGAGAGGTCCTTCTTGCTTCACCTCTCCACCCACAAGCCC
CTTCCAATCTTAAGAAACTCCTAGCAAGTGCCACCTGCCACCCCAGGAAG
TAAGAGCTGCCTTGCCCCTCAAGGTCCTGGCAGACTCAACTCAAAGACCT
CACCCTGTCCCACTGTCAACTTGATTCATTTGCCCAGCATGGAAATGGCA
GCTTAGTCCTACATCTCCACTCTAGAGGGGACCCTGTTGAGCCTCTCAAT
AAGCTGTATTGTCCTCGGAGGAAGTTGTGGCCTTGGGCCATGCAGTTCCC
ACCCATGGTTACTCAAAAGTGTTTTCTGCCTTCCCCGGCTCCAGAATTTT
ATGTGAGGTACCTGCCCCTTTCCTGTATTAGCCTCTGTGACCCCCGCCTT
GCC

CATGATAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTCCCAATTCCTGTTCTGAAGTTCTTCAGTGATGTAGA
AGAAATATAAGATGAAATAAATCCTTCCTCCCCAAGTTGCTTTTGCTCAT
GGTGTTTAATCACAGCAGAAATTGTAACTAGAACACATGGTTTAAAGCTT
TGGTTCCTCGTGCTTGCTTAGGACTACTTCATGCACCCACTGAGATCCCT
CCCCTCTTTTTGAGAAAGGTAGCTCAGGTCGGCCTTGAACTCACTATGTA
GTTGAGGATGACCTTGAACTCTTGGTTCTTTTGCCTCCTAAGTCCTGGGG
CAGGTACAGACATATGTTATCATGTCACGCTGCATTCATGTAGTACTTCA
AGGAAATACACTATATTTTTGTCTTCTGACTTGACACTCTTAGACAAAGT
TTGTGCAGATTTGGGTTTGTGGAAAATAAGGTGCACTTGCTCTTGTAGCC
TTCCATCCCTGTCTTGGGTTACAGACACGTTGGCACTTCACTGTTAGACT
TTAAATTACTGTGCTTTGGTATCTGCTTATACAGCCATATTTCCATTCTA
GAACCATCCTTTGTTCTTCTTGCTTCAGTTTTTACCAATCTTTCTCCTTT
TCTTACCTACCATTTGCATTTGCTATTCCCGGCCTGCCATTTCCTTAGCC
TTTCCCCCGTAACTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_l24.b1 MSMg01no121_l24.b1 CHROMAT_FILE:
MSMg01no121_l24.b1 PHD_FILE: MSMg01no121_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:38 2005
         (429 letters)



>mm_chr2_25726682_25727510
          Length = 829

 Score =  764 bits (395), Expect = 0.0
 Identities = 410/415 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgggcagggcagccatcaagtagcaagccaaagtggatcccagctttgcaggtgtat 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgggcagggaagccatcaagtagcaagccaaagtggatcccagctttgcaggtgtat 260

                                                                       
Query: 61  ggtgcaatccttgggtctcgagtcccatgaagtgcttggacaggatagtcagagatagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgcaatccttgggtctcgagtcccatgaagtgcttggacaggatagtcagagatagat 320

                                                                       
Query: 121 agctccctgggagcagagacagtttgggagaaagcatggtgaggttctgagcccagaagt 180
           ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 321 agctccctgggagcagagacagtctgggagaaagcgtggtgaggttctgagcccagaagt 380

                                                                       
Query: 181 tcccctatccatcttctgttgctttagatgtgggcagagccacacctttagggcctgacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccctatccatcttctgttgctttagatgtgggcagagccacacctttagggcctgacc 440

                                                                       
Query: 241 tgtgagaggtccttcttgcttcacctctccacccacaagccccttccaatcttaagaaac 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgagaggtccttcttgctccacctctccacccacaagccccttccaatcttaagaaac 500

                                                                       
Query: 301 tcctagcaagtgccacctgccaccccaggaagtaagagctgccttgcccctcaaggtcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctagcaagtgccacctgccaccccaggaagtaagagctgccttgcccctcaaggtcct 560

                                                                  
Query: 361 ggcagactcaactcaaagacctcaccctgtcccactgtcaacttgattcatttgc 415
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 ggcagactcaactcaaagacctcaccctgtcccactgttaacttgattcatttgc 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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