MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-122E17
Chromosome	2 (Build37)
Map Location	105,863,428 - 105,863,835
singlet/doublet	singlet
Overlap gene	LOC668765
Upstream gene	LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4
Downstream gene	Dcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC622356 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622356
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Wt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22431 MGI:98968
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	0610012H03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74088 MGI:1921338
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rcn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19672 MGI:104559
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pax6os1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:402728 MGI:3028033
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043391 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043391
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 27 mRNAs, 1450 ESTs, 10 Proteins

name	Pax6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18508 MGI:97490
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Elp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77766 MGI:1925016
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043394 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043394
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Immp1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66541 MGI:1913791
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043402 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043402
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Dph4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99349 MGI:1919522
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668765 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668765
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Dcdc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329482 MGI:3045363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	9330126M15 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:329483
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	C130023O10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320230 MGI:2443634
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC677260 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:677260
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 10 Proteins pseudo : _no_value

name	2700007P21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212772 MGI:1926020
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC383739 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383739
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	LOC622356 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249920 GeneID:622356
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : similar to NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 transcript_id : XM_001479293.1

name	Wt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120444921 GeneID:22431 MGI:98968
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Wilms tumor homolog transcript_id : NM_144783.2

name	0610012H03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21311852 GeneID:74088 MGI:1921338
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 0610012H03 gene transcript_id : NM_028747.1

name	Rcn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89179319 GeneID:19672 MGI:104559
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reticulocalbin 1 transcript_id : NM_009037.2

name	LOC100043391 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249990 GeneID:100043391
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 27 mRNAs, 1450 ESTs, 10 Proteins product : similar to QM protein transcript_id : XM_001479903.1

name	Pax6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227195 GeneID:18508 MGI:97490
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : paired box gene 6 transcript_id : NM_013627.3

name	Elp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803399 GeneID:77766 MGI:1925016
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : elongation protein 4 homolog (S. cerevisiae) transcript_id : NM_023876.3

name	LOC100043394 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249992 GeneID:100043394
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043394 transcript_id : XM_001479906.1

name	Immp1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126352347 GeneID:66541 MGI:1913791
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) transcript_id : NM_028260.2

name	LOC100043402 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249994 GeneID:100043402
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100043402 transcript_id : XM_001479915.1

name	Dph4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345660 GeneID:99349 MGI:1919522
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DPH4 homolog (JJJ3, S. cerevisiae) transcript_id : NM_026992.2

name	Dcdc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149249922 GeneID:329482 MGI:3045363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : doublecortin domain containing 5 transcript_id : XM_001481324.1

name	9330126M15 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249996 GeneID:329483
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein 9330126M15 transcript_id : XM_001479919.1

name	C130023O10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342825 GeneID:320230 MGI:2443634
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C130023O10 gene transcript_id : NM_177110.2

name	2700007P21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68299773 GeneID:212772 MGI:1926020
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2700007P21 gene transcript_id : NM_001025102.1

name	2700007P21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68299772 GeneID:212772 MGI:1926020
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2700007P21 gene transcript_id : NM_173750.2

name	LOC622356 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249921 GeneID:622356
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479343.1

name	Wt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120444922 CCDS:CCDS16496.1 GeneID:22431 MGI:98968
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0030855 - epithelial cell differentiation [Evidence IMP]; GO:0001747 - eye development (sensu Mammalia) [Evidence IMP]; GO:0007281 - germ cell development [Evidence IMP]; GO:0008584 - male gonad development [Evidence IMP]; GO:0001823 - mesonephros development [Evidence IMP]; GO:0001656 - metanephros development [Evidence IMP]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0009888 - tissue development [Evidence IMP]; GO:0006350 - transcription [Evidence IEA]; GO:0001570 - vasculogenesis [Evidence IMP] codon_start : 1 product : Wilms tumor 1 protein_id : NP_659032.2

name	0610012H03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21311853 GeneID:74088 MGI:1921338
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003824 - catalytic activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC74088 protein_id : NP_083023.1

name	Rcn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677691 CCDS:CCDS16498.1 GeneID:19672 MGI:104559
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 product : reticulocalbin 1 protein_id : NP_033063.1

name	LOC100043391 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249991 GeneID:100043391
definition	codon_start : 1 product : similar to QM protein protein_id : XP_001479953.1

name	Pax6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305369 CCDS:CCDS16499.1 GeneID:18508 MGI:97490
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence TAS] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence TAS] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IGI] [Evidence IMP]; GO:0007411 - axon guidance [Evidence IMP]; GO:0007409 - axonogenesis [Evidence IMP]; GO:0007420 - brain development [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IMP]; GO:0045165 - cell fate commitment [Evidence IMP] [Evidence IGI]; GO:0001709 - cell fate determination [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0009953 - dorsal/ventral pattern formation [Evidence IMP]; GO:0001747 - eye development (sensu Mammalia) [Evidence IMP] [Evidence IGI]; GO:0042462 - eye photoreceptor cell development [Evidence IMP]; GO:0030900 - forebrain development [Evidence IMP]; GO:0008285 - negative regulation of cell proliferation [Evidence IMP]; GO:0001764 - neuron migration [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0030334 - regulation of cell migration [Evidence IMP]; GO:0050767 - regulation of neurogenesis [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence TAS]; GO:0007435 - salivary gland morphogenesis [Evidence IMP]; GO:0007367 - segment polarity determination [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : small eye; Dickie's small eye; paired box protein product : paired box gene 6 protein_id : NP_038655.1

name	Elp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542608 CCDS:CCDS16500.1 GeneID:77766 MGI:1925016
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : elongation protein 4 homolog protein_id : NP_076365.2

name	LOC100043394 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249993 GeneID:100043394
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479956.1

name	Immp1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312276 GeneID:66541 MGI:1913791
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008233 - peptidase activity [Evidence IEA]; GO:0008236 - serine-type peptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : IMP1 inner mitochondrial membrane peptidase-like protein_id : NP_082536.1

name	LOC100043402 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249995 GeneID:100043402
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479965.1

name	Dph4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21729759 CCDS:CCDS16501.1 GeneID:99349 MGI:1919522
definition	GO_function : GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger, CSL-type containing 3 protein_id : NP_081268.1

name	Dcdc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149249923 GeneID:329482 MGI:3045363
definition	codon_start : 1 exception : unclassified translation discrepancy note : overriding stop codons product : doublecortin domain containing 5 protein_id : XP_001481374.1 transl_except : (pos:106038106..106038108,aa:OTHER) transl_except : (pos:106038133..106038135,aa:OTHER) transl_except : (pos:106038151..106038153,aa:OTHER) transl_except : (pos:106042976..106042978,aa:OTHER) transl_except : (pos:106043000..106043002,aa:OTHER) transl_except : (pos:106043009..106043011,aa:OTHER) transl_except : (pos:106050947..106050949,aa:OTHER) transl_except : (pos:106054333..106054335,aa:OTHER) transl_except : (pos:106054366..106054368,aa:OTHER) transl_except : (pos:106062203..106062205,aa:OTHER) transl_except : (pos:106062215..106062217,aa:OTHER) transl_except : (pos:106062260..106062262,aa:OTHER) transl_except : (pos:106070349..106070351,aa:OTHER) transl_except : (pos:106168914..106168916,aa:OTHER) transl_except : (pos:106168983..106168985,aa:OTHER) transl_except : (pos:106169061..106169063,aa:OTHER) transl_except : (pos:106176125..106176127,aa:OTHER) transl_except : (pos:106176185..106176187,aa:OTHER) transl_except : (pos:106185586..106185588,aa:OTHER) transl_except : (pos:106185631..106185633,aa:OTHER) transl_except : (pos:106189911..106189913,aa:OTHER) transl_except : (pos:106189920..106189922,aa:OTHER) transl_except : (pos:106189926..106189928,aa:OTHER) transl_except : (pos:106191687..106191689,aa:OTHER) transl_except : (pos:106191720..106191722,aa:OTHER) transl_except : (pos:106191738..106191740,aa:OTHER) transl_except : (pos:106197277..106197279,aa:OTHER) transl_except : (pos:106197316..106197318,aa:OTHER) transl_except : (pos:106198698..106198700,aa:OTHER) transl_except : (pos:106198731..106198733,aa:OTHER) transl_except : (pos:106198842..106198844,aa:OTHER) transl_except : (pos:106198845..106198847,aa:OTHER) transl_except : (pos:106202224..106202226,aa:OTHER) transl_except : (pos:106202263..106202265,aa:OTHER) transl_except : (pos:106202269..106202271,aa:OTHER) transl_except : (pos:106205575..106205577,aa:OTHER) transl_except : (pos:106205626..106205628,aa:OTHER) transl_except : (pos:106205665..106205667,aa:OTHER) transl_except : (pos:106205683..106205685,aa:OTHER) transl_except : (pos:106205692..106205694,aa:OTHER) transl_except : (pos:106205716..106205718,aa:OTHER) transl_except : (pos:106205728..106205730,aa:OTHER) transl_except : (pos:106208164..106208166,aa:OTHER) transl_except : (pos:106209846..106209848,aa:OTHER) transl_except : (pos:106209867..106209869,aa:OTHER) transl_except : (pos:106209888..106209890,aa:OTHER) transl_except : (pos:106212590..106212592,aa:OTHER) transl_except : (pos:106212614..106212616,aa:OTHER) transl_except : (pos:106217216..106217218,aa:OTHER) transl_except : (pos:106217273..106217275,aa:OTHER) transl_except : (pos:106218066..106218068,aa:OTHER) transl_except : (pos:106224329..106224331,aa:OTHER) transl_except : (pos:106224344..106224346,aa:OTHER) transl_except : (pos:106225615..106225617,aa:OTHER) transl_except : (pos:106225663..106225665,aa:OTHER) transl_except : (pos:106241276..106241278,aa:OTHER)

name	9330126M15 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249997 GeneID:329483
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479969.1

name	C130023O10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893049 GeneID:320230 MGI:2443634
definition	codon_start : 1 product : hypothetical protein LOC320230 protein_id : NP_796084.1

name	2700007P21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68299774 CCDS:CCDS16503.1 GeneID:212772 MGI:1926020
definition	codon_start : 1 product : hypothetical protein LOC212772 protein_id : NP_001020273.1

name	2700007P21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27819655 CCDS:CCDS16503.1 GeneID:212772 MGI:1926020
definition	codon_start : 1 product : hypothetical protein LOC212772 protein_id : NP_776111.1

name	LOC668765 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668765
definition	number : 1 pseudo : _no_value

name	LOC668765 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668765
definition	number : 2 pseudo : _no_value

name	LOC668765 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668765
definition	number : 3 pseudo : _no_value

name	LOC668765 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668765
definition	number : 4 pseudo : _no_value

name	LOC668765 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668765
definition	number : 5 pseudo : _no_value

name	LOC668765 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668765
definition	number : 6 pseudo : _no_value

name	LOC668765 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668765
definition	number : 7 pseudo : _no_value

name	LOC668765 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668765
definition	number : 8 pseudo : _no_value

name	LOC668765 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668765
definition	number : 9 pseudo : _no_value

name	LOC668765 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668765
definition	number : 10 pseudo : _no_value

name	LOC383739 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383739
definition	number : 1 pseudo : _no_value

name	Pax6os1 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:144226218 GeneID:402728 MGI:3028033
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Pax6 opposite strand transcript 1 transcript_id : NR_002867.2

name	LOC677260 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149249924 GeneID:677260
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 10 Proteins product : similar to Ac2-008 pseudo : _no_value transcript_id : XR_034184.1

clone name	MSMg01-330A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476E03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-511I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-127D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433B08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-378J24
singlet/doublet	doublet
plural/unique	plural

clone name	B6Ng01-103K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130B23
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-122E17.T7 (MSMg01no122_e17.b1)	MSMg01-122E17.TJ (MSMg01no122_e17.g1)
ACC	AG332193	AG332194
length	1,006	1,073
length of high quality (start - end)	574 (120 - 693)	567 (124 - 690)
definition	CHROMAT_FILE: MSMg01no122_e17.b1 PHD_FILE: MSMg01no122_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:35 2005	CHROMAT_FILE: MSMg01no122_e17.g1 PHD_FILE: MSMg01no122_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:36 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CACCTTNTNTAAACATTGCGCGCTATAGACTCCTATANGGAGAGGATCCG CGGAATTCAGTAAGGAACACACCCGATAAGGTCATTATATCTAACTTTCT AGTACTGCATACCCTTTACACACACACAGTGTCACACACACACAGACAGA CACACATCTAGATTGCCAGTTATTCTTTAAATTATTTTAAAGAATATAAA AACAGTTTAGTACAAAAAAGTCCTTCTGCAGTGTAATGGTTGTATTCTTA AAAAATCTTGAAATACCAGATTTATTTTGTTAGAGCAGTAGCTCAAGCTG CTAAGAGAAAACATGGACAGTAAAGGAGGTAAGGATTTTGGGTAAGACCT CAAAATTATAGTAAACAAAAATAGAAGTAGACAGATGAGACTACTCAAAA ACAAACAATAGAGAAGTGGAAAAAAGTCAGTATCTACATCTGACCAAGAG TTAATAGCCAGAACAGATGTTGAATTTTTAAAAGCCAATAGCTGGGGGCA GCGGGGGGAGGCAATTTAACTGGGCAACAAGGTTAAACAGACATCTCTCA AATGAAGATATCCAAAAGGCTACAAACAGGTATCTGGAAAAAAATCAACA TTTTGAAATATCGGGGATATGCAAGTTAAAAGTACAAGGACTTATTGGCT AACGTGAGTAAAAATGACTATTAGTAAAATGACTAAGGGTGAGTGCTGGA GAGGATGTGGTCTATATAGCAAGTTCCAGGACAGTCAGGACTGCACAGAG TAAGCCCTGTCTCAAAAGAAAAATGAATTAAGTCAGTAAGTTATAATTAC CTAATATTAAGAAAGCTCTATCATGCTTAATGTGCCAATAAAGAATGATT TAGAAAATAGCCAATAAATGTTTCCTGATATGTTAATTAAAAAGAATAAG GACCTCCGGAAATGTTTTTTTGAATCATTAATAATAAATAAAGGTCCTTT TTTAAGGGAAAGGCCAATAAATAATTTTTAAAATTTAAATATATAATATA TTTTTA	ATATCTTTTNNTTTACATGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXCTTTATCAGCTGAGGAATACCGAATG TCTGAGAAGCACCCCCTTTAAATGTTCAACATCCTTAATCATCAGGGAAA TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCCCTCAGCATGTCT AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG AGGAATACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT GGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACGGGAG GATCCAGCAATACTTCTCCTGGGCATTTATCCAGAAGATGCCCCAACTGT TATGAAGGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAG CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG ATAAGTGGATATTATCCCCAAACCTAGGATTCCCAAGATATAAGGTACAA TTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTCCACCC TATGCCCCTCCTTATAATTGGAAACAAAACACCCATGTAAGGAATTACAG ATACAAAGTTTGGAGCTGAAATGAAAGGATGGACCATGGTAAAGACTGCC ATATCCAGGGAATCCACCTCCATTAATCCACATCCAAAACAGCTGACCAC CATTGGCTATACCCCTAATTAAAGAATTTTTATTTGAAAAGGAACCCCAG AAATGTAACCTCCTCCTCCTTTGCTGAAAACCTATGCCCCTGGGGTCCCC AATCCCAAAACCCCAGGAAAGCTGGGGAAAGTTTCTCCAACAAGGTTCCT ATCTCTAATAAGGGTAATTGTGA
quality values	Open. Hide. 6 6 8 6 6 3 0 3 0 3 9 9 9 9 8 8 6 6 8 8 8 8 8 6 6 6 6 8 15 19 10 8 8 8 8 10 3 0 3 21 14 25 25 30 30 33 37 37 47 37 37 28 28 28 37 36 39 34 23 24 22 24 26 33 37 37 37 33 37 23 19 11 10 6 6 6 6 6 6 9 11 11 13 24 26 33 33 33 31 31 36 36 36 36 36 50 50 36 38 35 35 28 26 33 33 33 33 28 22 19 13 10 8 8 8 8 8 10 12 17 25 25 30 30 30 39 30 37 47 36 36 36 37 37 57 59 59 59 40 37 35 35 42 42 54 54 57 54 54 54 54 57 54 54 47 47 39 42 42 42 37 37 46 46 48 50 41 41 41 41 47 48 48 54 54 57 57 68 44 44 29 26 18 20 20 19 26 30 39 39 41 59 46 57 57 48 48 48 50 57 54 54 50 57 50 50 43 43 32 32 32 43 38 38 39 59 59 59 52 52 52 52 52 57 57 57 57 57 57 57 43 43 38 29 29 38 44 43 54 57 59 52 52 52 57 57 57 57 57 68 68 68 68 68 57 57 57 57 57 57 57 57 57 59 57 57 57 35 43 43 57 57 57 57 57 57 57 57 52 57 52 52 52 52 52 52 52 43 52 52 62 43 44 43 45 45 52 62 62 62 62 62 62 52 43 43 35 35 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 52 52 62 62 62 62 62 52 52 62 62 52 52 62 62 62 41 41 43 43 52 62 62 62 62 62 52 52 52 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 44 43 29 29 29 43 39 35 35 43 43 39 39 39 39 39 39 27 12 39 10 10 8 8 8 10 18 43 43 52 52 52 62 62 39 39 39 39 39 39 29 39 29 35 35 43 43 31 31 43 44 62 62 62 62 62 62 52 52 52 62 62 43 52 43 43 31 31 43 44 62 43 43 39 39 39 44 62 62 62 62 62 62 62 62 62 52 62 62 54 52 62 62 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 52 43 44 43 39 39 43 62 43 43 41 43 43 62 44 44 35 31 31 35 43 43 43 52 62 62 62 62 62 62 62 52 52 52 43 44 43 31 21 29 21 20 20 38 26 31 31 43 44 44 62 52 52 52 62 62 62 62 62 62 62 62 43 39 57 57 59 59 57 45 45 52 44 44 43 43 39 57 57 52 52 52 57 57 57 44 39 31 31 43 43 57 57 57 43 43 33 33 33 43 43 52 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 50 57 57 52 43 43 44 44 27 23 23 28 44 44 57 52 43 43 43 52 43 43 33 33 33 43 43 43 37 37 43 44 43 31 35 42 39 42 57 44 44 35 35 35 37 42 42 35 33 33 42 32 35 35 39 42 37 39 37 43 43 39 43 39 43 23 26 12 13 13 25 28 37 43 43 43 37 43 34 43 39 35 24 25 12 15 15 19 18 28 28 28 15 15 21 13 14 21 22 28 31 21 21 23 22 22 33 34 40 40 37 32 32 15 15 12 12 12 22 24 30 30 23 23 23 26 20 12 12 10 15 15 21 23 28 33 28 28 14 12 10 10 13 10 13 15 19 16 16 16 24 24 28 24 24 15 21 19 19 12 15 15 15 18 20 30 41 39 39 37 37 35 24 18 17 13 10 10 10 12 13 12 13 12 12 11 14 14 20 19 19 22 37 37 30 17 13 19 10 10 10 27 20 17 12 15 10 9 8 8 8 8 20 21 22 25 19 22 8 9 9 10 10 14 10 10 10 10 10 9 11 13 12 11 11 10 12 8 8 9 8 10 9 9 9 10 9 9 10 17 13 13 15 12 15 25 18 19 12 10 9 9 10 9 10 8 12 10 9 9 12 10 10 10 15 18 15 16 6 6 6 6 8 6 9 9 14 9 11 9 11 10 8 8 8 8 8 8 8 8 10 8 8 8 8 12 10 10 10 11 12 26 26 24 15 11 10 8 8 10 10 8 8 8 8 8 8 8 6 6 6 13 10 18 12 13 10 9 10 9 12 12 19 25 28 34 20 13 11 10 13 12 13 16 17 11 11 10 10 10 8 8 8 13 10 10 9 9 9 10 12 14 17 17 10 10 10 13 15 24 23 8 8 8 10 7 9 8 8 12 13 12 9 9 9 11 9 16 28 32 25	Open. Hide. 6 6 8 8 8 8 8 8 3 0 0 3 8 6 6 6 6 6 6 6 6 6 8 7 6 6 6 8 7 12 10 10 6 6 6 6 8 7 13 17 9 9 8 8 8 15 13 15 8 8 12 20 24 28 30 24 28 28 29 25 18 18 21 34 33 42 42 42 41 27 27 11 9 9 9 12 12 13 12 8 6 6 6 8 15 17 19 24 28 31 33 33 50 36 50 38 42 42 42 42 38 38 36 36 37 48 42 42 37 41 25 25 11 12 11 12 10 11 10 10 19 15 20 19 24 26 30 36 36 43 43 57 48 47 42 42 42 43 43 47 53 47 48 43 43 57 57 57 57 43 59 48 48 48 48 48 42 44 37 37 37 42 44 48 48 47 47 50 42 50 47 47 47 57 57 57 57 57 54 54 57 57 57 59 32 24 8 10 8 12 10 13 32 32 47 44 43 37 37 36 44 36 43 43 57 57 57 57 57 59 59 59 59 59 57 57 57 57 57 57 59 57 44 42 31 31 38 44 43 52 52 57 52 52 43 43 43 43 52 59 59 57 52 52 52 52 52 59 59 59 57 52 52 52 57 57 57 57 57 57 57 57 57 57 57 57 57 52 52 57 57 52 52 52 52 52 43 59 57 52 52 52 45 45 52 52 57 57 52 52 52 52 52 52 52 62 62 62 62 62 45 45 45 62 62 62 62 52 52 43 43 62 52 52 52 52 62 44 43 43 52 38 38 20 43 43 44 43 62 62 62 43 45 45 62 62 62 52 43 44 39 43 43 62 43 62 52 45 43 62 62 62 62 62 52 45 45 62 62 62 62 62 62 62 62 54 54 62 62 62 62 52 52 52 62 62 62 62 62 62 44 43 35 35 43 43 52 43 62 62 62 62 44 43 35 26 24 12 23 23 29 29 29 39 39 43 43 39 43 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 52 62 43 62 43 52 52 43 44 35 43 43 62 62 62 62 62 62 62 62 38 32 12 12 11 13 12 33 33 43 43 35 43 43 45 52 62 62 62 52 52 52 43 43 35 43 43 44 43 62 62 43 43 43 43 43 43 43 26 26 26 35 33 39 43 43 39 43 33 43 43 43 43 52 52 52 52 52 57 52 43 35 34 34 24 34 34 52 59 44 43 33 33 33 39 39 44 33 33 33 43 43 43 57 57 57 57 44 36 20 18 18 24 41 44 57 52 52 43 50 32 32 20 32 38 43 43 52 52 57 57 57 52 38 38 18 18 18 38 38 43 43 41 41 43 44 44 48 59 57 39 39 39 42 30 24 13 18 18 32 24 33 35 42 42 35 19 24 18 15 23 36 28 32 27 32 22 37 37 37 37 37 39 37 37 43 43 43 48 48 43 43 28 28 30 32 30 32 30 30 30 30 30 30 43 39 43 43 43 39 40 43 39 39 30 30 30 34 32 32 30 30 30 37 37 28 28 13 13 13 25 25 37 34 34 19 17 9 9 10 12 27 37 43 40 40 32 28 22 13 13 24 28 39 48 37 34 34 34 28 19 20 22 12 12 12 22 18 16 13 13 15 22 8 8 8 22 18 11 11 13 18 20 19 13 13 15 22 26 21 15 15 15 18 17 15 19 15 13 11 12 12 19 21 19 17 10 10 9 10 10 15 10 10 8 8 8 8 8 8 6 8 8 10 14 23 30 25 18 18 13 13 16 16 16 14 14 9 10 10 14 14 19 8 8 6 6 10 10 12 14 16 10 12 12 12 17 19 22 21 14 14 14 13 13 11 8 8 8 8 15 15 16 20 16 17 10 9 9 9 9 9 9 17 15 12 10 10 10 10 9 8 9 9 13 12 12 10 10 8 8 8 8 10 9 10 10 13 10 10 10 9 8 8 8 9 9 9 9 12 13 12 14 12 9 9 9 11 12 8 8 8 10 10 9 9 10 12 15 15 12 10 10 10 10 11 12 10 15 19 8 8 8 10 8 9 8 18 16 19 20 18 10 6 6 6 8 8 9 6 6 8 8 8 8 8 10 8 8 6 8 6 6 8 8 10 13 10 10 10 10 8 10 10 12 13 12 10 10 10 8 8 8 8 8 9 9 9 10 8 10 10 12 12 20 23 19 20 28 21 16 10 10 9 8 8 8 8 8 8 8 8 10 10 6 6 8 8 8 9 10 10 10 10 9 9 9 10 10 8 8 8 8 8 8 8 8 8 8 8 8 10 13 12 8 8 8 8 9 9 10 9 10 9 9 9 9 10 10 12 11 8 10 10 8 8 8 8 8 9 9 11 15 10 10 10 13 9 11 9 10 9 7 7 7 8 8 8 9 8 9 9 9 11 10 10 7 6 8 8 10 8 8 8 8 8 8 8 8 8 7 6 6 6 8 8 8 8 11 13 11 11 9 7 6 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no122_e17.b1 MSMg01no122_e17.b1 CHROMAT_FILE:
MSMg01no122_e17.b1 PHD_FILE: MSMg01no122_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:35 2005
         (574 letters)



>mm_chr2_105863428_105864401
          Length = 974

 Score =  774 bits (400), Expect = 0.0
 Identities = 406/408 (99%), Gaps = 1/408 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacacacagtgtcacacacacacagacagacacacatctagattgccagttattcttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 acacacacagtgtcacacacacacagacagacacacatctagattgccagttattcttta 349

                                                                       
Query: 61  aattattttaaagaatataaaaacagtttagtacaaaaaagtccttctgcagtgtaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aattattttaaagaatataaaaacagtttagtacaaaaaagtccttctgcagtgtaatgg 289

                                                                       
Query: 121 ttgtattcttaaaaaatcttgaaataccagatttattttgttagagcagtagctcaagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttgtattcttaaaaaatcttgaaataccagatttattttgttagagcagtagctcaagct 229

                                                                       
Query: 181 gctaagagaaaacatggacagtaaaggaggtaaggattttgggtaagacctc-aaaatta 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 228 gctaagagaaaacatggacagtaaaggaggtaaggattttgggtaagacctcaaaaatta 169

                                                                       
Query: 240 tagtaaacaaaaatagaagtagacagatgagactactcaaaaacaaacaatagagaagtg 299
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 168 tagtaaacaaaaatagaagtagacagatgagactacacaaaaacaaacaatagagaagtg 109

                                                                       
Query: 300 gaaaaaagtcagtatctacatctgaccaagagttaatagccagaacagatgttgaatttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gaaaaaagtcagtatctacatctgaccaagagttaatagccagaacagatgttgaatttt 49

                                                           
Query: 360 taaaagccaatagctgggggcagcggggggaggcaatttaactgggca 407
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  taaaagccaatagctgggggcagcggggggaggcaatttaactgggca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information