Query= MSMg01no122_e20.b1 MSMg01no122_e20.b1 CHROMAT_FILE:
MSMg01no122_e20.b1 PHD_FILE: MSMg01no122_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:36 2005
(694 letters)
>mm_chr2_158166057_158167150
Length = 1094
Score = 1185 bits (613), Expect = 0.0
Identities = 672/693 (96%), Gaps = 5/693 (0%)
Strand = Plus / Plus
Query: 5 gaattcgtctttcattcatccctttacttctttttcagaaatgacattttcctttcaatt 64
|||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatctttcattcatctgttttcttctttttcagaaatgacattttcctttcaatt 263
Query: 65 ccatcttagctaaatcacatcactttaaaaaaaagatttatttttattttatgtgtatga 124
| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgatcttagctgaatcgcatcactttaaaaaaaagatttatttttattttatgtgtatga 323
Query: 125 gtgtttgtcagaatgtatgtctacgcacacatgcgtgcctggtgtctgcagaggatgtgg 184
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 324 gtgtttgtcagaatgtatgtctatgcacacatgtgtgcctggtgtctgcagaggatgtgg 383
Query: 185 gctgccaggtgggtcctctgcaagagcag-cagagctcttaacccctgagccatctctcc 243
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 384 gctgccaggtgggtcctctgcaagagcagccagtgctcttaacccctgagccatctctcc 443
Query: 244 agcccttggatctcatcacttttgatgcaatgtgtttttggtttgtttctttttttctca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcccttggatctcatcacttttgatgcaatgtgtttttggtttgtttctttttttctca 503
Query: 304 tttgattttgaacttgcaattttgacttcccattgctctcacatgtaactgaagaggggg 363
||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 504 tttgaatttgaacttgcaattttgacttcccgttgctctcacatggaactgaagaggggg 563
Query: 364 tgccaagtgttttgggtgtttggtctttgtgtcctttctactgttgatttaattgct--g 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 564 tgccaagtgttttgggtgtttggtctttgtgtcctttctactgttgatttaatt--taag 621
Query: 422 gttgactgattgttaagtaacatgccgtctggtgtttctatcatgggaacacactgtgtt 481
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 622 gttgactgattgttaagtaacatggcgtctggtgtttctatcatgggaacacactgtgtt 681
Query: 482 agtcacttgtcttgttgctgtgacaaaacaccctgataaaggttgtgtacagagagaggg 541
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 682 agtcacttgtcttgttgctgtgacaaaacaccctgataaaggtagtgtacagagagaggg 741
Query: 542 ggtttcttttggctcacagtttgagggtacagtcatcatggtttagaagtccggatgctg 601
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 742 ggtttcttttggctcacagtttgagggtacagtcatcatggtttagaagtcgggatgctg 801
Query: 602 ggagcttgaggaagctggtcacattgcatctacaatgaaaaaaagagatgatcgctggtg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ggagcttgaggaagctggtcacattgcatctacaatgaaaaaaagagatgatcgctggtg 861
Query: 662 cttagcctgccatctcctttccattcagcctgg 694
|||||||||||||||||||||||||||||||||
Sbjct: 862 cttagcctgccatctcctttccattcagcctgg 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_e20.g1 MSMg01no122_e20.g1 CHROMAT_FILE:
MSMg01no122_e20.g1 PHD_FILE: MSMg01no122_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:36 2005
(331 letters)
>mm_chr2_158326279_158327009
Length = 731
Score = 586 bits (303), Expect = e-172
Identities = 324/331 (97%)
Strand = Plus / Minus
Query: 1 acatgagcaagctaagatcgtctcagagagctgcttgattagaaggccttcacctaagag 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 674 acatgagcaagctaagatcgtctcagagagctgcttcattagaaggccttcacctaagag 615
Query: 61 ctgtgacacacttgctccccactggatcagatcctgttcagatggggtggctctggctgt 120
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 614 ctgtgacacacttgctccccgctggatcagatcctgttcagatggggcggctctggctgt 555
Query: 121 acagtgatgctcactccccaaagggagatgccctccaccccaccccaccccaccctattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acagtgatgctcactccccaaagggagatgccctccaccccaccccaccccaccctattt 495
Query: 181 ctgacttcctctcctagcagcacccaggtaccccaaacgaggacattgggaaccacagca 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 494 ctgacttcctctcctagcagcacccaggtacctcaaacgaggacattgggaaccacagca 435
Query: 241 ttcatttcagacccccttctcctcccagctgtgagctgatgtcctaaggaaacaggaatt 300
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 434 ttcatttcagacccccttctcctcccagctgtgagctgctgtcccaaggaaacaggaatt 375
Query: 301 gttgcaggattttccctgtccaatcacatta 331
||||||||| |||||||||||||||||||||
Sbjct: 374 gttgcaggaatttccctgtccaatcacatta 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space: 232484
Effective search space used: 232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
