Query= MSMg01no122_f16.b1 MSMg01no122_f16.b1 CHROMAT_FILE:
MSMg01no122_f16.b1 PHD_FILE: MSMg01no122_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:43 2005
(681 letters)
>mm_chr2_164354404_164355484
Length = 1081
Score = 741 bits (383), Expect = 0.0
Identities = 420/441 (95%), Gaps = 14/441 (3%)
Strand = Plus / Minus
Query: 1 aggaaagggggaagtgccaccgtctgtctctgagaggcacctagaccaacactggacatc 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 427 aggaaagggggaagtgccaccgtctgtctcagagaggcacctagaccaacactggacatc 368
Query: 61 actgatgctcagaactggatgccagaaactccacctttgtcaacatgggaagggcacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 actgatgctcagaactggatgccagaaactccacctttgtcaacatgggaagggcacaga 308
Query: 121 tgaaggacacaggtgaggatgagacctggggctaacattctggctgcaaccccaacactg 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tggaggacacaggtgaggatgagacctggggctaacattctggctgcaaccccaacactg 248
Query: 181 cagctagcgctgagcagagaataggtgcttatgcatgcatttacagcgtgtgtatgagtg 240
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 247 cagctagcgctgagcagaaaataggtgcttatgcatgcatttacagcatgtgtatgagtg 188
Query: 241 tgagagagagtgtgtgcatgcttgtgtgtgtgtctgcgtgtgtgtgcgctcacaaaaata 300
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 187 tgagagagagtgtgtgcatgctt--------------gtgtgtgtgcgctcacaaaaata 142
Query: 301 aaagagcatgtgcattttatacaatgctaggggaaaatgattttaaaaagaaaagagcca 360
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 aaagagcatgtgcatttaagacaatgctaggggaaaatgattttaaaaagaaaagagcca 82
Query: 361 cccaggaactaaggagctgactctggataaagtgcttactgtacaggcatcagaactcag 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 cccaggaactaaggagatgactctggataaagtgcttactgtacaggcatcagaactcag 22
Query: 421 gtttggactctcagcacccat 441
|||||||||||||||||||||
Sbjct: 21 gtttggactctcagcacccat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_f16.g1 MSMg01no122_f16.g1 CHROMAT_FILE:
MSMg01no122_f16.g1 PHD_FILE: MSMg01no122_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:43 2005
(735 letters)
>mm_chr2_164268574_164269708
Length = 1135
Score = 1392 bits (720), Expect = 0.0
Identities = 729/732 (99%)
Strand = Plus / Plus
Query: 1 gaaagcttaggcctgcggggtgctgcgctgggcaagctggaaaccactggggtgggaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaagcttaggcctgcggggtgctgcgctgggcaagctggaaaccactggggtgggaccc 260
Query: 61 aacccgcccggggacccgcccacagcgtgcctgccggctccaaactgacctcaatctgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacccgcccggggacccgcccacagcgtgcctgccggctccaaactgacctcaatctgta 320
Query: 121 gctccaggagctgcagcccatgatagttaaccggtctactgcgaggcagtctgcctaaaa 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gctccaggagctgcagcccatgatagttaaccgatctactgcgaggcagtctgcctaaaa 380
Query: 181 tccgaggatcactgcttagcccccaatttatagctggggaaactgaggcccataaacggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccgaggatcactgcttagcccccaatttatagctggggaaactgaggcccataaacggg 440
Query: 241 gtaggattgactaggggtctgctgtttttaccagtcttcaaagcgggtgcgctccgcttt 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 gtaggattgactaggggtctgctgtttttaccagtcttcaaagcggatgcgctccgcttt 500
Query: 301 gtcagggagtattccccaagtggcgcttgaattcggatagtttttgattagcaactctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcagggagtattccccaagtggcgcttgaattcggatagtttttgattagcaactctga 560
Query: 361 accgacaacgacgaaatggttcaagtttttccaggcctgctgtcgaaattattccaaccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accgacaacgacgaaatggttcaagtttttccaggcctgctgtcgaaattattccaaccc 620
Query: 421 cagggcgccagcgcagaagcagctggaaagacaaaggaacgagcctgcctgtgcactaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagggcgccagcgcagaagcagctggaaagacaaaggaacgagcctgcctgtgcactaaa 680
Query: 481 cagtgtgatttatcaactgaagtgtgaattgtgtgtaatactcacgtgtcacgaaatagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtgtgatttatcaactgaagtgtgaattgtgtgtaatactcacgtgtcacgaaatagt 740
Query: 541 cttactcttttgacttgtcttctcaattgactctcttatttctcaaggcggcttctacac 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttactcttttgacttgtcctctcaattgactctcttatttctcaaggcggcttctacac 800
Query: 601 cggatccaagaatgttgcttctaacaccatcctaacaaagtaggtaatggtaagattctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cggatccaagaatgttgcttctaacaccatcctaacaaagtaggtaatggtaagattctt 860
Query: 661 tagtcccaccctcagcacagatactgatggaatcaataatcgaaaaactgaaggacacac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tagtcccaccctcagcacagatactgatggaatcaataatcgaaaaactgaaggacacac 920
Query: 721 acacacacacac 732
||||||||||||
Sbjct: 921 acacacacacac 932
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1135
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1125
Effective search space: 815625
Effective search space used: 815625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
