Query= MSMg01no122_h06.b1 MSMg01no122_h06.b1 CHROMAT_FILE:
MSMg01no122_h06.b1 PHD_FILE: MSMg01no122_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:55 2005
(699 letters)
>mm_chr2_35948919_35950018
Length = 1100
Score = 1268 bits (656), Expect = 0.0
Identities = 677/684 (98%), Gaps = 1/684 (0%)
Strand = Plus / Minus
Query: 17 ggaattcggcctcgttgaggagcctgtgctttgccgcatccattacgacaccatgatcga 76
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 900 ggaattcggcctcgttgaggagaaggtgctttgccgcatccattacgacaccatgatcga 841
Query: 77 gaacctcaagagggccgccgagaacggtacccaatccgcccaacccagcacctaatccca 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 gaacctcaagagggccgccgagaacggtacccaatccgcccaacccagcacctaatccca 781
Query: 137 gtcctttcccaggttccctagcacccaagttcgtggtccgcacaattgtactggctgagc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gtcctttcccaggttccctagcacccaagttcgtggtccgcacaattgtactggctgagc 721
Query: 197 ggtccctggaacacctggaggcagcatcggggtggggctacacgtggagcatgcgctctg 256
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 720 ggtccctggaacacctggaggcagcatcggggtggggctacacgtggaacatgcgctctg 661
Query: 257 gctccatcacttgcatgggctactaagtcactacctaaccttgtaacaatctcacatggc 316
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gctccatcatttgcatgggctactaagtcactacctaaccttgtaacaatctcacatggc 601
Query: 317 tcccagcggcctacaagctccgctaacccccaccccattctgcctgccagctgcctgagc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tcccagcggcctacaagctccgctaacccccaccccattctgcctgccagctgcctgagc 541
Query: 377 agtccaagagataagatgtagcccacattcttcccacttccttatgggccacacaaagcc 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agtccaagagataagatgtagcccacattcttcccacttccttatgggccacacaaagcc 481
Query: 437 agaggctaagggtgggtcatcttagatctgaggttctgaacataaaaattttaaagggac 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agaggctaagggtgggtcatcttagatctgaggttctgaacataaaaattttaaagggac 421
Query: 497 cagt-ccccgagtcttggagacgcggctttaccatacaatgtcagcaaacgaggatttct 555
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 420 cagtcccccgagtcttggagacgcggctttaccatacaatgtcagcaaatgaggatttct 361
Query: 556 ttttctcattgggcctccctcttcccgtcctacatctgctcatgatacctagatgttgga 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttttctcattgggcctccctcttcccgtcctacatctgctcatgatacctagatgttgga 301
Query: 616 ctagaatgttccttgaatctcctctggctctggcacgattttctcaagacatttatccta 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctagaatgttccttgaatctcctctggctctggcacgattttctcaagacatttatccta 241
Query: 676 gggtcttggtgaaattcttcaatg 699
||||||||||||||||||||||||
Sbjct: 240 gggtcttggtgaaattcttcaatg 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1100
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1090
Effective search space: 751010
Effective search space used: 751010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_h06.g1 MSMg01no122_h06.g1 CHROMAT_FILE:
MSMg01no122_h06.g1 PHD_FILE: MSMg01no122_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:55 2005
(728 letters)
>mm_chr2_35793119_35794246
Length = 1128
Score = 1363 bits (705), Expect = 0.0
Identities = 723/729 (99%), Gaps = 2/729 (0%)
Strand = Plus / Plus
Query: 1 gagcagggaatactaaatggtactagaaatgcctaacataaaactacctgagatgccttc 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 gagcagggaatactaaatggtactagaaatgccaaacataaaactacctgagatgccttc 260
Query: 61 aaagcagagcagaaaggaaaatgtattgtgctatggtttcagctgggaggaaatgagggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagcagagcagaaaggaaaatgtattgtgctatggtttcagctgggaggaaatgagggt 320
Query: 121 ctgcctcaaagcatggtgggaagagagaaagcattctgtttgacacgtgtgagccattgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcctcaaagcatggtgggaagagagaaagcattctgtttgacacgtgtgagccattgt 380
Query: 181 cacagacttggcagaaataaagctactctgaagagatgctcagctctcaccatctaactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagacttggcagaaataaagctactctgaagagatgctcagctctcaccatctaactg 440
Query: 241 gctagtgacacaatgaaccctggaagtcgtatcctgggggg-aggaaaagaaccaggcag 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 gctagtgacacaatgaaccctggaagtcgtatcctgggggggaggaaaagaaccaggcag 500
Query: 300 aggagaaacctgcctctcagaaagagatctcacatagctctaacagcttatagaccagca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagaaacctgcctctcagaaagagatctcacatagctctaacagcttatagaccagca 560
Query: 360 tgcagaatgacaggaagcacagactgagacaggtcagtgtgagtgggacgacacttgggc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcagaatgacaggaagcacagactgagacaggtcagtgtgagtgggacgacacttgggc 620
Query: 420 agggctacttacctgtgtgcaaccttgactctctacttaaattctgatctcacctgagga 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggggctacttacctgtgtgcaaccttgactctctacttaaattctgatctcacctgagga 680
Query: 480 atctttgagggcttttctggatctctgtccctcctccagtggggccacactgactaaatt 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atatttgagggcttttctggatctctgtccctcctccagtggggccacactgactaaatt 740
Query: 540 cctttcattttttttttctgctttcaatgtttaatttggctcttttaattgacttattga 599
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctttcattttttttt-ctgctttcaatgtttaatttggctcttttaattgacttattga 799
Query: 600 ggagaggtggacaggcttgactggaggcacaaggtgtggggtaacacatggtatgagcct 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ggagaggtggacaggcttgactggaggcacaaggtgtggggtaacacatggtatgagcct 859
Query: 660 agtactacagttatattcacataatgggtttttgacacttgatatactacaggcacggtg 719
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 860 agtactacagttatattcacataatgggtttttgacatttgatatactacaggcacggtg 919
Query: 720 gtgcacgcc 728
|||||||||
Sbjct: 920 gtgcacgcc 928
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 728
Length of database: 1128
Length adjustment: 10
Effective length of query: 718
Effective length of database: 1118
Effective search space: 802724
Effective search space used: 802724
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
