Query= MSMg01no122_k08.b1 MSMg01no122_k08.b1 CHROMAT_FILE:
MSMg01no122_k08.b1 PHD_FILE: MSMg01no122_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:20 2005
(672 letters)
>mm_chr2_27649428_27650500
Length = 1073
Score = 1038 bits (537), Expect = 0.0
Identities = 560/571 (98%), Gaps = 7/571 (1%)
Strand = Plus / Minus
Query: 1 tcatgatttgaggccacatttcatcctttc----ccttctgttccagacatatgtattgt 56
|||||||||||||||||||||||||||||| | |||||||||||||||| |||||
Sbjct: 568 tcatgatttgaggccacatttcatcctttcaaaac---ctgttccagacatatgcattgt 512
Query: 57 ctatgatgagcacacctgtttctgtagacaagctgacagaggtgaccatggaaggagtct 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctatgatgagcacacctgtttctgtagacaagctgacagaggtgaccatggaaggagtct 452
Query: 117 tcttcaagatgttagaggcagtgtggcataggtaccagcagcctggtcttgccccagagg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tcttcaagatgttagaggcagtgtggcataggtaccagcagcctggtcttgccccagagg 392
Query: 177 ggaacctccaagatgacctttacgctaaacactcagcatctccctccttgctcattccag 236
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 391 ggaacctccaagatgacctttacgctgaacactcagcatctccctccttgctcattccag 332
Query: 237 gtcacccaagcactcggatgccaccagccctttcctatccatcctgcctctcagaggcac 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtcacccaagcactcggatgccaccagccctttcctatccatcctgcctctcagaggcac 272
Query: 297 ctggctgtggtgagtgagtctgggtcccacctgaaaaggactggaagatgtgggtgtccg 356
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctggctgtggtgagtgagtctgagtcccacctgaaaaggactggaagatgtgggtgtccg 212
Query: 357 gtgtgccattccctccctgtggctctctccctatctgtccaataagaagatagagagctc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gtgtgccattccctccctgtggctctctccctatctgtccaataagaagatagagagctc 152
Query: 417 tctgaggtcttgcccagccccagaaaccttatgatttcatgagtgatggtcactatccct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tctgaggtcttgcccagccccagaaaccttatgatttcatgagtgatggtcactatccct 92
Query: 477 ggataaactctgtggctcccaacactgtggaccaagaagtgagttccaaaaccaagaaac 536
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ggataaactctgcggctcccaacactgtggaccaagaagtgagttccaaaaccaagaaac 32
Query: 537 cctgtagagacatgatgcacacacccacagc 567
|||||||||||||||||||||||||||||||
Sbjct: 31 cctgtagagacatgatgcacacacccacagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1073
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1063
Effective search space: 703706
Effective search space used: 703706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_k08.g1 MSMg01no122_k08.g1 CHROMAT_FILE:
MSMg01no122_k08.g1 PHD_FILE: MSMg01no122_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:20 2005
(722 letters)
>mm_chr2_27491365_27492486
Length = 1122
Score = 1336 bits (691), Expect = 0.0
Identities = 716/727 (98%), Gaps = 7/727 (0%)
Strand = Plus / Plus
Query: 1 ggctccattcttaactcataaaatggtggtgcctt--gtttgaagagatgtctcagcagg 58
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 198 ggctccattcttaactcataaaatggtggtga--taggtttgaagagatgtctcagcagg 255
Query: 59 taaagatgtctgctgccaagcctgacctcctgagttccatctcctgcatctacacagtgg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 taaagatgtctgctgccaagcctgacctcctgagttccatctcctgcatctacacagtgg 315
Query: 119 gaagagaaaactgactcccacaggttgtcctctaacctctacttgcatgccatagcatgt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gaagagaaaactgactcccacaggttgtcctctaacctctacttgcatgccatagcatgt 375
Query: 179 acatgcgtgcatgctcgcgcacacacttgcacatgtacacacatgcacacacattaaata 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 acatgcgtgcatgctcgcgcacacacttgcacatgtacacacatgcacacacattaaata 435
Query: 239 aattgtatataacaatagaaataatagtgacagctatgagttaaataagatgataacaag 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aattgtatataacaatagaaataatagtgacagctatgagttaaataagatgataacaag 495
Query: 299 aaaagcctttgtagagccggttatggtggcacacgcctttaatcccagcactcgggaggc 358
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaaagcctttgtagagccgggcatggtggcacacgcctttaatcccagcactcgggaggc 555
Query: 359 agaggcaggtggatttctgagttcgagaccagcctggtctacaaagtgagttccaggaca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agaggcaggtggatttctgagttcgagaccagcctggtctacaaagtgagttccaggaca 615
Query: 419 gccagggctacacagagaaaccctgtctcaaaaaacaaaacaaaacaaaaacaaaaaaca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 616 gccagggctacacagagaaaccctgtctcaaaaaacaaaacaaaacaaaaacaaaaacca 675
Query: 479 aaaaccaaaaaacaaaacaacaacaa---aaagcctttgtaaaatgttgggtcttagcca 535
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 676 aaaaccaaaaaacaaaacaacaacaacaaaaagcctttgtaaaatgttgggtcttagcca 735
Query: 536 tatctgggtattccttgaaggatctaggaaagatccacaaaagggctgaggcccagctag 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tatctgggtattccttgaaggatctaggaaagatccacaaaagggctgaggcccagctag 795
Query: 596 ttctaaatttcatatgcatagctcttgcctaggttccctaggagctatggaacccttcaa 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ttctaaatttcatatgcatagctcttgcctaggttccctaggagctatggaacccttcaa 855
Query: 656 ctctggaggctctccattggctgcccaaagctcttgtcctccccccacatgcctgctcct 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ctctggaggctctccattggctgcccaaagctcttgtcctccccccacatgcctgctcct 915
Query: 716 ccagggt 722
|||||||
Sbjct: 916 ccagggt 922
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1122
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1112
Effective search space: 791744
Effective search space used: 791744
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
