BAC Information

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BAC

Clone NameMSMg01-123G11
Chromosome2 (Build37)
Map Location 33,562,435 - 33,562,708
singlet/doubletsinglet
Overlap genenone
Upstream geneCdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918
Downstream gene2610528K11Rik, LOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123G11.T7 (MSMg01no123_g11.b1)MSMg01-123G11.TJ (MSMg01no123_g11.g1)
ACCAG333014AG333015
length1,2111,302
length of high quality
(start - end)
---274 (126 - 399)
definitionCHROMAT_FILE: MSMg01no123_g11.b1 PHD_FILE: MSMg01no123_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:05 2005CHROMAT_FILE: MSMg01no123_g11.g1 PHD_FILE: MSMg01no123_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGCTTTTNNGGCATTGGGGCTATAGATCCTATGGGAGAGGATCCGCGGA
ATTCTCTCTTGGAAAANAGCTATTAGACCCCCCNNNNNNNNNNNNNGNNN
NNNNGGNCCTTAAAGGCCCGGGNNNNNNNGNNGNNNNNNNNNGGNNNNNN
NANGAGNNNNNNNNGNGNGGNNNNNNNGAAGGNGGGGGGNNNGGNGGGGG
NNNGGNGGNNNNNGGNNNNNGGGGGGGNNGANNNNNGGGGNNNNNGGGNN
NGGNNNNNNGGGNNNNNNNGGNGNGNGNNNNGNNNNGGGNNNGNNNNGNN
GNNGNNNNNNNNNGGNNNGNNNNNNNGAGNNNNNNNNNNNNNNNNNGNNN
GGNNNNGGNGNNGNGGNGGGGNNNNGGGNGGNGNGNNNNNNGNTTTTTTT
TTTAGGGGNNNNGAGANNNNNNAGANGGAANGGAAAAAAAGAGGCCCCCC
GATTTTTCCCCCCCCCCCGCAAGGANCAACANCCCCCAAAAAAAAGGGGG
GGGAAAGCNGCNGCAACCACGGGGGGAAAAAGGCNACCCGAAGCCAGGCC
CGCAAGCAAGACCAAGCCCCAACCAAGCGCGCGCCNGGACNNNGCCCCCC
AAGAGCCACCAGGGGAAAGAGCGGGCGGACACGAAGCCCACCGAGGACAA
GGACACCAAGCCCGGGGGCAACCACCCCACCAAGAGACCGCGGAAACACG
AGAGNCAACACCGAACACACCGGCCCAGGGAGCGGCCACCGCCAGCCAGA
GGGCGAGCAAACAACCCGAGGGTTTTTTTTTTTTTGGACAGNAGANGCCG
AAGGAACCCCCCCACCTATCGCGGTCCTCGTGGAACCCGGGGGCGACTGA
GAATGGTGTGTTTTTTTTGTTCGCCAGGGCGCCAAGTCCGTGACGGATTG
TTTCTATTGTTGGAAGGAACAGGGTATTATGCGACGTTGGGCGTGCTTGC
TTAAACCGGGTAAAAAATCGTTGGCCCTGCTCGCACGGTTTATGTGTGTC
CCTGTTCTTTTTTTTTTATTCTGAACTCTTTTCATCTGTAGCGAGTCTGT
GTGTTCCTATCTCTGTCTTGTTAGGGTCTTTTCTGTCGGTGTTGGTTCTG
ATCGCACTTATGTCTCGGCTTTGTCATATTTTGGGGGCCTTGGCATATCC
CTGGGTCTTTCGTTTGTTTTTCTTCTTTCCCCACTGGCCCTTCTGTATTG
TTCCTACTTCT
NNCCCCGCGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTTAGACAGGAGAGTGTACCTTGCATGCCA
TTTCACCAACCTTTAAGCTGAGGCAGTATCCTGGAGTCTCACTGGACAGG
ACCAGCTAGGAGAGGCTTTGTAGTGATGGGATACTTTGAGTAGGTTACCC
TCTGGGCAGAAGGTACGTGCTGAAAAAGTCAAAGGGCCAACTGGGAAGGA
AGAGGCTGTGAAATATAGAAAGATCAAAGAGGTGCCAGCTGCTCTCACCT
GCAGTCTCAGTACTATGGAAACGCATCCTGAATTTGAGGTTAATCTGGTC
TATGCACTGAGTTCCCAGTCAGCCTGGGCTATACATCGGGAGACACAGAA
CTTTTTTTAGATAAAGAGGAAGAGAGCTTCGAACAGAGAGATGCGGTCTC
ATTTTTTTGTTTCCCCCCCCCAGTGGGCTCCTCGCCTTTGAAGGAAGGAG
AAGGCCTAATTGTCCCTGGGATGTACAGAGTGGCTTGACTTTTTCATCCT
TTTTGAATGCCTTAATGAGGCTGTGGCCTCTCGGTGGTAGCTTTGCTCCC
TGAAACTGGGTTTGATAAAATGGACGGACTGTCTGGGACGAGTTACTGGG
TCCCACTCCCTTCCCTTTTGAACCTTGCGGTGTTTTTGTTCTTTCGGGGT
CGGCAGGCTGGGGACTAAGAGTTTGTCCTCTGTTCTCAGTTGTTCCATGC
CATCCGTCCTCTCTTGTAACTCTCTTGTTGGTTTATATGTTATCTCTGTT
CATTTGTCTTGTTCAATATTATTACCCGTCTATCAGTCTTTTTTTATGTC
TTTTGTCCTCCCCTCTTTTTTCTTCTTCTCCTATTGCCTCTAGTTGGTCT
TATCCTATTTTCTTTTTCCCTGTGTTCCTTCTTTTCTTTTTTTTCTTCTA
CTTTCTTTCTTTTTATTCTCCTTTTTTTCTTTTTTTCTTTTTCTTTTTTT
CGTTCTTATCTTTCCTTCCTTCCTCTTTCCACCTCTTTTATCCTTCTTCT
TACTTCTCTATTTATTTTCTTTCTCTCCTTTTTTTTTTTTCTCGTACTCT
TCCTTTACTCTGCTTTTCTCTTCTTAACTCTATCTTTTTCTTTCTTTCCT
TTGTTACTTTTTTACTTTGTTCTCTCTCTCTCAACTTATTGTCATCTCTA
TTCATCTTTGTACTCTTCCTCACTCTCTTGTCCTCCTTTTTCTATCTCTC
TCTTATCTCTATCTCTCGTACCTGTCTTNTACTTTCTTTCTTCTTATTCT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_g11.g1 MSMg01no123_g11.g1 CHROMAT_FILE:
MSMg01no123_g11.g1 PHD_FILE: MSMg01no123_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:05 2005
         (274 letters)



>mm_chr2_33562235_33562908
          Length = 674

 Score =  522 bits (270), Expect = e-153
 Identities = 273/274 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatcctggagtctcactggacaggaccagctaggagaggctttgtagtgatgggatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatcctggagtctcactggacaggaccagctaggagaggctttgtagtgatgggatact 260

                                                                       
Query: 61  ttgagtaggttaccctctgggcagaaggtacgtgctgaaaaagtcaaagggccaactggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagtaggttaccctctgggcagaaggtacgtgctgaaaaagtcaaagggccaactggg 320

                                                                       
Query: 121 aaggaagaggctgtgaaatatagaaagatcaaagaggtgccagctgctctcacctgcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggaagaggctgtgaaatatagaaagatcaaagaggtgccagctgctctcacctgcagt 380

                                                                       
Query: 181 ctcagtactatggaaacgcatcctgaatttgaggttaatctggtctatgcactgagttcc 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ctcagtactatggaaacgcatcctgaatttgaggttagtctggtctatgcactgagttcc 440

                                             
Query: 241 cagtcagcctgggctatacatcgggagacacaga 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtcagcctgggctatacatcgggagacacaga 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)