BAC Information

Click to search

BAC

Clone NameMSMg01-124N23
Chromosome2 (Build37)
Map Location 69,287,922 - 69,288,055
singlet/doubletsinglet
Overlap geneLrp2
Upstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9
Downstream geneBbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124N23.T7 (MSMg01no124_n23.b1)MSMg01-124N23.TJ (MSMg01no124_n23.g1)
ACCAG334115AG334116
length1,1831,288
length of high quality
(start - end)
134 (102 - 235)---
definitionCHROMAT_FILE: MSMg01no124_n23.b1 PHD_FILE: MSMg01no124_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:33 2005CHROMAT_FILE: MSMg01no124_n23.g1 PHD_FILE: MSMg01no124_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATAGGGAGAGGATCCGCGCACTTCCTTTAGACCATTATACCCTTA
AAGGTCCCCAGAATACTACACAACTGATTCCATCGCCCTTTAGAGCCTTC
TCTTTAAGGNAATGACCTCGATGCACTTACAGTTTACAGAGGGTTAAGAT
GCAGTACATTGTGTTTTACTGTGCATCATTAATCAAAATCTTTATTTTTT
TTCTTGAAAGGAGTCTTGGCCTCCAACCTACTACAAGTGAGTGACATTAG
ACAGTTGTCCACCCCCTAAGGAGGGCTCATCATATGGAGAGGAAAGCCAA
CAAGGCTATAGGGCTAAAGAGGAGGGCCAGAGTCTAGGAAGCACAAGAGG
AACAGATGTTCCTCACAGAGAGGCTATTTTTATCTACCCAAATCCCTTCT
GATTCAAGTGGGGCCCTTCCAATATCTGCTTTTGTCTGAACACATTCCTG
GCCTGGTATCTCCATGCCTTATAGCATGCCCTAGGTGCTGTTAAATCCTG
ACTCTAGTTAAACTCATGCTTTTTCCCATGGTTATTGTGGCTATCCTTAG
CCCCAGAATCTGTTTACGGTTTGAATTGTTACAAAGTCCTAAACTTTTTT
TCCTTTCCCCTTGTAGAATTGAAATCTTAACTTTTTTCGGTCCTTGGCTT
TTTTATTTGGAAAAAAACCTAATCCTTTTTCCCCATTTTTCCACCAGTGG
GTTTTCCTCTTCCTAAACACCAAACTCTTTTGTCAATAACACCTGCATTT
TAAATTACTTCTCTTTATACACTCAAATTTTTTTTATATCCAATACTTAC
TTAATTTTCCTGAAATTTCTTTCACATTGTTCTAATATACTCTCCTCTCT
TTTTTCCCCTGGAATTCTTTCCTTCCTTGAAACCTTATACCCTAACAGAA
CTTCTCACCATATTTTCTACTCCCTCGTTCTCTCCATAAACTCCTTCTCT
TTTTTTAAATAAACTTCTGGCATTTCCTCATCCCCCCTATCTCCCCCTAT
CTAACAACTACATCCCTTTATAAATTCCCCTTTATTTTATCATCTTTTTT
CTTCTCCTGCTAATCTTTCAACACCCTCCCTTCTCCTCAAATACCTTCTG
GCGGTTTTTATGCCTCTCCTCCCCCGTCTATATTCACTCTTGTTAATTTT
CTTGTGTCTTTCATCTTTATTTATCCTCTCTCT
GGAACATTCAAGGANCCGNGCCCTTTAAGACTCCTTTAAAAGCCCTCTTA
CCCTGGTANACCCTTTAGGGCCTGGGGNTGNTGANAAGGAAGAGNTCTGT
AACCAGGCACAGGGCTGGTCCCTGTTAGGGTCACCCAAGATGGAAAATGT
CAAGTTGGTGACATTACCTGTGGCTAAGAAAGAGCCTTTGTCTCTTCTCT
ATAGGAGTTAGGTCTTTTGGACTGGGAGGATACCGACTTCTCTTGTGTGT
GCGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTTGTTGTGTGCGTGTGT
TCGTTCTTATCTCCTGTTATTGTTTTTTTTTTTATTCCCAGACCTCAATT
TTTTTTTTTTTGTTAAACTCTCCCTCTTTTTTTTTTCTATTGGTTCCTGG
TTACTCTTTCTTTTTTTTTTCCCCCCCCCCCCTGGTTTTTTGTCTTTTTT
CATAAAAAAAAGGGTGGTTCTTCTTTTCTCTTTTTTTTGTTTTACTTATA
ATCATACTCTTCCCTTTACTTATTCTTTTTTTTTTTCTCTTGTAATTATT
TTCCTATTTTACTATCTTTTTGTCTGTTATATTCTTATAATTCTCTTCTT
TCATTTCCTTTATTGTTCTTCTCCTTTTTATCTTTCTTCTCTTTTTCTTT
TTTTTTTATTTTTCATACTTTATTTTCTTTATTTTCTTTTTTTATCTCTC
ATATTTTTTTTTTCTTTTTCTTTTCTCTTTTATTTTACTTTTCCTTCTAT
TTACATTCATTCTTTCTCTTTTTATTCTTGACATTTTCCTGTCTTTTTTT
CATTACTATATTTCACTTCCCTTTTTCTTCTTTTACTAATAACCTTCTTT
TCGTACTTTTCCTATTTTTTTCTATTTTTGTCCTTCTTCTTCTCTTTCTT
CTTCTCTACTCTTTATTGTTCTCCTATTTTATTTTATTATATGCTTTTTT
TTGTGCTCTTTATATTCTTCTGTCTTCTATTCGTTTCTTCTTATCATGTT
ATCTCTTTTCTCTTATTTCTTTATTTCTTTTGTTTATTTACTTTTTATTC
TTTTCTTCCTCTCTTTGTTCTTTTTTCTCAATTCTATTTTCTTTCATTCT
AATATTGTCTCCTATATTTTTGCATATCCTTTTTCTCTCTTTTGCTTTCT
TTTCCTTATCTTCTCTTCTTTTTCTCTATTTCTATATTCTTTATATATCT
CTTTTCTTTATCTTGCAACTCTTTCTTCCTTCTTTTTCTTTCTTCTCATC
TTCTTCTTCTTACTTCTTCCATAGATTATTTCGCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_n23.b1 MSMg01no124_n23.b1 CHROMAT_FILE:
MSMg01no124_n23.b1 PHD_FILE: MSMg01no124_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:33 2005
         (134 letters)



>mm_chr2_69287722_69288255
          Length = 534

 Score =  253 bits (131), Expect = 2e-72
 Identities = 133/134 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttaaggnaatgacctcgatgcacttacagtttacagagggttaagatgcagtacattg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttaaggtaatgacctcgatgcacttacagtttacagagggttaagatgcagtacattg 260

                                                                       
Query: 61  tgttttactgtgcatcattaatcaaaatctttattttttttcttgaaaggagtcttggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttttactgtgcatcattaatcaaaatctttattttttttcttgaaaggagtcttggcc 320

                         
Query: 121 tccaacctactaca 134
           ||||||||||||||
Sbjct: 321 tccaacctactaca 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)