Query= MSMg01no125_n16.b1 MSMg01no125_n16.b1 CHROMAT_FILE:
MSMg01no125_n16.b1 PHD_FILE: MSMg01no125_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:01 2005
(559 letters)
>mm_chr2_96686956_96687915
Length = 960
Score = 1052 bits (544), Expect = 0.0
Identities = 556/560 (99%), Gaps = 1/560 (0%)
Strand = Plus / Plus
Query: 1 tcatttcctatttacctaaagacacacacatattaatcttgatctataaagtttaaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatttcctatttacctaaagacacacacatattaatcttgatctataaagtttaaataa 260
Query: 61 agaaatcaataaaaa-tatatcattatattcatcaaatttcactgctcattggattcctg 119
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaatcaataaaaaatatatcattatattcatcaaatttcactgctcattggattcctg 320
Query: 120 ctcaccatatcttcactcagatgtgaagtgttttgaatatggccacagatagattttata 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaccatatcttcactcagatgtgaagtgttttgaatatggccacagatagattttata 380
Query: 180 caagtatatacttacttacagcatgcatcagcaaagtggaaaagtagagattaaaagtag 239
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagtatatacttaattacggcatgcatcagcaaagtggaaaagtagagattaaaagtag 440
Query: 240 gtaagacacttggaaattctaaagctatacaagagatgtcgtgaatcattatttgtatgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaagacacttggaaattctaaagctatacaagagatgtcgtgaatcattatttgtatgt 500
Query: 300 tctagaattgcagttggaatttaaagtggtgcacaaataatttgtgataacaaataccct 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tctagaattgcagttggaatttaaagtggtgcacaaataatttgtgctaacaaataccct 560
Query: 360 taaatttacccacccacacaactgatgttttaaaaatactaaagtttattaatttaatcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaatttacccacccacacaactgatgttttaaaaatactaaagtttattaatttaatcc 620
Query: 420 tcttttaatttttaatatttgatggaagttgtgatatatacaataatacaaaaacttgtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttttaatttttaatatttgatggaagttgtgatatatacaataatacaaaaacttgtg 680
Query: 480 cagatgaagatactgcaaggataatttaaaagacccctttcatttaggatatgcacatta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagatgaagatactgcaaggataatttaaaagacccctttcatttaggatatgcacatta 740
Query: 540 gtgactatatactactagga 559
||||||||||||||||||||
Sbjct: 741 gtgactatatactactagga 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 960
Length adjustment: 10
Effective length of query: 549
Effective length of database: 950
Effective search space: 521550
Effective search space used: 521550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_n16.g1 MSMg01no125_n16.g1 CHROMAT_FILE:
MSMg01no125_n16.g1 PHD_FILE: MSMg01no125_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:01 2005
(455 letters)
>mm_chr2_96790265_96791119
Length = 855
Score = 681 bits (352), Expect = 0.0
Identities = 364/368 (98%), Gaps = 1/368 (0%)
Strand = Plus / Minus
Query: 88 taggagggaagctaagaaaaattctgctctgtacaagacatggctcatatacatcataac 147
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 855 taggagggaagctaagaaaaattctgctctgtac-agacatggctcatatacatcataac 797
Query: 148 ttgaatcagatgtggtagcctaaacaagaccttccccagttcaggccatttaaacgattt 207
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ttgaatcagatatggtagcctaaacaagaccttccccagttcaggccatttaaacgattt 737
Query: 208 agcatagatagaagggacttctgaggcccctgtagtaactatagtgctattggcaattga 267
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 736 agcatagatagaagggacttctgaggcccctgtagtaactaaagtgctattggcaattga 677
Query: 268 tgggtactgagagataaagaggtgcctttatgtggtgatataactactgaaaggctttga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgggtactgagagataaagaggtgcctttatgtggtgatataactactgaaaggctttga 617
Query: 328 acagccagtgaataactatacatttattcccaagtacaactaattacattagcttgtcta 387
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 616 acagccagtgaataactatacatttattcccaagtacaactaattagattagcttgtcta 557
Query: 388 ttgttaataatgatgataaaaataacaatagaaaatccgtaaatttgagtgacaggtgga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ttgttaataatgatgataaaaataacaatagaaaatccgtaaatttgagtgacaggtgga 497
Query: 448 tatatcag 455
||||||||
Sbjct: 496 tatatcag 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
