BAC Information

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BAC

Clone NameMSMg01-126P11
Chromosome2 (Build37)
Map Location 112,667,575 - 112,667,760
singlet/doubletsinglet
Overlap geneRyr3
Upstream geneLOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126P11.T7 (MSMg01no126_p11.b1)MSMg01-126P11.TJ (MSMg01no126_p11.g1)
ACCAG335639AG335640
length6951,548
length of high quality
(start - end)
194 (66 - 259)---
definitionCHROMAT_FILE: MSMg01no126_p11.b1 PHD_FILE: MSMg01no126_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:33 2005CHROMAT_FILE: MSMg01no126_p11.g1 PHD_FILE: MSMg01no126_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAATCCGCGGAA
TTCAGGAAGTTCCAGACCAGCTAGCTTAGTGTCTGAAGGGAAAACCAAAT
CATTGAAGACCCCGTCTCAAATAAGATGGAAGTCAAGGACCAAACTCTGA
GGCTGTTGTCTTCTGATCCCAACATGCATGCTATGGCTCATGTATGCCCA
CACGCGCACATGTGTACACACACACACACACACACACACACACACACACA
CACACACACTCACTCGCCAAATACTCGCAAAAAAAATAAAAATAGATACA
ACAAATGGTATAATATATATTTAATTTTATGCGAACATATATCCAACCAT
ATACCGAGATAACTACCTAGCACCCTGTTGAAACTCCAGTGTGAAAAATA
GTCCAATTTATTCCCCCCCACTAAAAAATGGATTATAATAAAAGTGATAT
TAAAAGTGCTATATAAATTTCTGTAAATATACACAAAATCAGAAATATAT
TTACTACAATATCATCTCTGCGACCAGCTCTGCTACGAGTTCAAATTCTA
CCTCAAATATGTGCCAAAAATCATGCACCTTTTGAGCAACCTTTAGTATA
GAAAAAACCACATAAAACCCCAACTCTAATTTGACATCTACTACCCTTTT
CCATATCCTACAAAAAAAATTTAAATAAACGACTTCCAGAGTGGG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTNNNCCCCCT
TNCCCTTTGCTCTCCTCCCANNNNACATCTNNNNNNNNCNNNNNNNNNNN
NNNNNNCNNNNNNCTNNCTTCCCCCCTGCGCNTNTTNCTNTTTTNCCCNN
ATTCNNNTNTTTTTCTTNTCTTCTNCCCCCCTTNNNGCTCNNTCCCTNCC
CCNGCNNNNTCCNNCNNTNNCTCCCTNNTTCCNTGTNNNCNNCCCTNTTN
NTCTCTTTTGATTGCTCCTTTCNCTCCTTGCTCTTNTTGTGTNTCNTNGT
ATGTTCCACCGCCTCTCCTCCTNNCCCCTNTGTGTCGCCGNCTGCTTCTC
CCGTATCTCTATNTTATTTATGCGTCGTCGCTATTTCTATCCTTNTGTCC
ATCCGTTTTGATCNAGGTTCCTTACTNACCTTATTGCCTTCCTGTTGTAC
TCCATTATCGGTACCCTTGTATTATGTCNATTATGCTCTCTAGTGGGGTG
TGACTTGCAGAACGCGTGTCGTAGCTGCGCGCTGTATTCTGTGATGTGTC
GCGCGATTCTCTTATCACCACGCTCATGTCCTCATACGCTACGTANTATT
ACTGTACCGCATCGTCGTATGCCTCGTGACTCCCGTCCGACTTACGCGAC
GTTATATGCGCTCGCGTGCCTGCCTGGCTACGCTCTACGCCCCNTCTATA
NCTGCTGCTGCGATGCTAGTGCCGCGGATCCGAGGTNGGCGTGTCGGAGG
GTATGCTGTAGACATCGCGCGGTATANCTCTCTGTGCGCGGTGCGCGTGT
GGAGGCCGGATCTAGCGGTAGGNGCATGCGATAAGTGACGTTAGGACCGT
CTATACGCTCGCGTCGAGGCACATGACGCGCGACGCGAGATATTATGTCG
GCTGAGCCGCGTCAGTGAGTTGTAGTGCGCAGCGCGATAGATACCGATGA
NGCCCGCTAGTGCACGCTATCTCGCGATACGAAGAGTAAGCGCGGATAAG
AGCGTACTTATCACGTACACATGCACGACTGTATAACATTGCACGTCTGC
GAGACGTATCGCCTACGGTATGTCGATCGCTGTCAAGACTACTGCAGGGA
GTATGAGTAGACGCCCGACGCGTGTGACNACGTGAGAGGACGACCGCAAG
NGCGTGCGCGCNGCATGGTCAGTTGTACGGTAGGTGTGAGCGATGCGTAG
GTCATCGGCGCCGCCTATACGATGCGCACGCTTATCTCCGGCTGTCTCTT
GGTTCCNCTGCTCGTTCCGCNATCTCCTCCGATTGCGATGTGATACGCGC
AGTCGATGCTGCGTCGTCTANTATACTATACTGTGCTCAGTTCTNCGATT
CTAGACTATGCATGTATCCGTAGATGATCGCGCGTGTGTGTGGTCAGGCT
GCNGAGACCTCACACATGTAGCGAGTCGCGCACGCGCACGATCACGTGAN
TCGCACAGCGAATGTGCACATACCTCGCACACGTGGTAGTATCATCGTAA
CTCAGCGTGGCGAACTCACTCTTTCGCTCNGCTCGTCAATGGAGTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_p11.b1 MSMg01no126_p11.b1 CHROMAT_FILE:
MSMg01no126_p11.b1 PHD_FILE: MSMg01no126_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:33 2005
         (194 letters)



>mm_chr2_112667428_112668021
          Length = 594

 Score =  352 bits (182), Expect = e-102
 Identities = 185/186 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accagctagcttagtgtctgaagggaaaaccaaatcattgaagaccccgtctcaaataag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 accagctagcttagtgtctgaagggaaaaccaaatcattgaagaccccgtctcaaataag 274

                                                                       
Query: 61  atggaagtcaaggaccaaactctgaggctgttgtcttctgatcccaacatgcatgctatg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 273 atggaagtcaaggaccaaactctgaggctgttgtcttctgatcccaacatgcatgcgatg 214

                                                                       
Query: 121 gctcatgtatgcccacacgcgcacatgtgtacacacacacacacacacacacacacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gctcatgtatgcccacacgcgcacatgtgtacacacacacacacacacacacacacacac 154

                 
Query: 181 acacac 186
           ||||||
Sbjct: 153 acacac 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 13
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)