BAC Information

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BAC

Clone NameMSMg01-127A05
Chromosome2 (Build37)
Map Location 16,158,122 - 16,158,447
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667329, LOC227588, LOC625457
Downstream genePlxdc2, 4930515L03Rik, LOC383665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127A05.T7 (MSMg01no127_a05.b1)MSMg01-127A05.TJ (MSMg01no127_a05.g1)
ACCAG335675AG335676
length707710
length of high quality
(start - end)
344 (43 - 386)637 (74 - 710)
definitionCHROMAT_FILE: MSMg01no127_a05.b1 PHD_FILE: MSMg01no127_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:37 2005CHROMAT_FILE: MSMg01no127_a05.g1 PHD_FILE: MSMg01no127_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTTTTTCCCTATACTTTTTATTGATCATCTCATGGATTTTAATCTGT
GATGTCTTGTACTCATAAAACTCTTAGTCAACCTTCCCTTAATACTGCCA
TTATGTTTACAGCACCATGCCTTTCTTTTACACCTTTTTATGCTCTTCCT
GTTTATCCTATGAAATAACTCTACACAATGGATATATATTTATTGAAGCA
TTGGGATAATTTGATTTACACAAATCTCCCTCATTAGCATGTACGTGATT
TATTTATTTATTTATTTATTTATTTATTTTGGGATGTGTACATTGTTTGT
GCATAATATATAGATGTTATACATATTGGATGTGGCTTTTTTTCTTCGTT
TTTGACCCCCCCCCGAGTTAACACTCTCCCAAAGTCTTTCCGTTAATTCC
CGGTCTTCCCTTCCTCTTCTTTTATCCCTTCCTTTCTTTTCATCCATTCT
CCTTTCTTACCTCCCTCATTCCTTCCTTACTTCTCTCTTCCCCCCTCCCC
CCTTTTCTTTCCTTCTTCTCTTCCCTACTTCTATAAATCATCGTCACCTT
CCCCCTTATCCTTTCTTTCCCCCTCTTCCCCCCCTCCTTTACATTTTTCC
CCCATATCTTCTCCTTTTCATATTCCTCGCTCTTATCCTCCTCACTCCTC
TCCTCCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATAAACCCAAACACACCAGAAAAGCA
AGATTCACAATTAAAGTGATGCTGGTAGAGGATTTTAAAAAGTACATTAA
TAACTCCCTTAAAAAAAATACAGGAGAAGACAGCTAAATAGGTAGAAGCC
CTTTAAGAGGAAACACAAAAATACCTTAAAGAATGACAGGAGAACACAGG
TAAACAGGTAAAAGACATTAAAGAAGAAACATAAAAAGCCCTTAAAGAAT
TATAGGAAAACAGAAACAAACAGTTGAAGGAATCGAACAAAACCACCCAG
AATCTAAAAATGGAGGTAGAAAAAAAATCACAAAGGGAGACAACTATGGA
GATAGAAAACTAGGAAAGAAATTAGGAGCCATATACATAAGCATCACCAA
CAGAATACAAAAGATGGAAAAGAAAATCTCAGGTGCAGAAGACTCCATAG
AAAACATTGATGCAACAGTCAAAGAAAATACAAAATGCAAAAGATCCTAA
CCCAAAACATCCAGAAAATCCAGGACACGATGAGAAGACCAAACCTACAG
ATAATAGGTATAGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGTAAA
TATCTTCCACAAAATTATAGAAGAAAACTTCCCTAACCTAAAGAAAGAGA
TGAATATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_a05.b1 MSMg01no127_a05.b1 CHROMAT_FILE:
MSMg01no127_a05.b1 PHD_FILE: MSMg01no127_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:37 2005
         (344 letters)



>mm_chr2_16158037_16158781
          Length = 745

 Score =  545 bits (282), Expect = e-159
 Identities = 319/340 (93%), Gaps = 15/340 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtttttcc-ctatactttttattgatcatctcatggattttaatctgtgatgt 63
           ||||||||||| |||  |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaattctgtttctccaatatattttttattgatcatctcatggattttaatctgtgatgt 352

                                                                       
Query: 64  cttgtactcataaaactcttagtcaaccttcccttaatactgccattatgtttacagcac 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 351 cttgtactcataaaactcttagtcaaccttcccttaatactgccattatgttcacagcac 292

                                                                       
Query: 124 catgcctttcttttacacctttttatgctcttcctgtttatcctatgaaataactctaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 catgcctttcttttacacctttttatgctcttcctgtttatcctatgaaataactctaca 232

                                                                       
Query: 184 caatggatatatatttattgaagcattgggataatttgatttacacaaatctccctcatt 243
           ||||||||||||||||||||||||              ||||||||||||||||||||||
Sbjct: 231 caatggatatatatttattgaagc--------------atttacacaaatctccctcatt 186

                                                                       
Query: 244 agcatgtacgtgatttatttatttatttatttatttatttattttgggatgtgtacattg 303
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 185 agcatgtacgtgatttatttatttatttatttatttatttaatttgggatgtgtacattg 126

                                                   
Query: 304 tttgtgcataatatatagatgttatacatattggatgtgg 343
           |||||||||||||||||||||||| |||||||||||||||
Sbjct: 125 tttgtgcataatatatagatgttagacatattggatgtgg 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 745
Length adjustment: 9
Effective length of query: 335
Effective length of database: 736
Effective search space:   246560
Effective search space used:   246560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)