BAC Information

Click to search

BAC

Clone NameMSMg01-127C09
Chromosome2 (Build37)
Map Location 107,180,340 - 107,337,923
singlet/doubletdoublet
Overlap genenone
Upstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127C09.T7 (MSMg01no127_c09.b1)MSMg01-127C09.TJ (MSMg01no127_c09.g1)
ACCAG335774AG335775
length707707
length of high quality
(start - end)		361 (43 - 403)282 (71 - 352)
definitionCHROMAT_FILE: MSMg01no127_c09.b1 PHD_FILE: MSMg01no127_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:48 2005CHROMAT_FILE: MSMg01no127_c09.g1 PHD_FILE: MSMg01no127_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,180,340 - 107,180,696)(107,337,642 - 107,337,923)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCATGACCTGGGGACCCTCTCTGTCTATCTTCCTTATTCATTTTACAT
AGAATTTTAATCTAGTTTGTTTTACTCAGTTTATGCTAATTGATTCCTGA
GTCCTTTCATTCTCTCAATTCTACCGATATACCATCCCAGCCAGTGCCAC
TTATCTTCCAGAATTGATTTTTAATTTTATATGCTTGTAATTCGGCATTT
TAATATATAATCGCCCATTAAGGGACAGTTACCTAAGAGTACGGCTTGTA
ATGAACAGCATGAGCCCATGGGTTTATTACAGGGAATTATTCTAGAGCTA
AATACAGGTCTCTACAACAGACAAAAGACTAAAGATTGTTGTTCGTTTCT
GTTTCCCCCAGCTGATAGAAAATCTGATATTTTTATTATGCATACCAGGA
AAGATAATGGGAGAGAAGGAGTCTGATTTCAGTGCTCAGGGCTTCGTCAT
TGCTTGGATGTGTTAAAAAAAAAAAACAAAATACAAAATACTAATGATAC
TTGGAAATTGAATACTATCTTTTCCAGTATCAAGATTGGTTTAGGCTTTT
GTTTACGCGTCACTCTTATTCCTGGCTTGGAATCACGCCAAGAACACACA
ACTATTTATACTGATGAATGGAGAAATCTTGGAACATATCTAGGAAAAAA
CTGACGG

TACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTACAGTAGCTGTTTAGGGAAATATACAT
TTTTGTTAATGCCTCCTGCTAATAACTGTCCAAAGGCAAATACCATTATA
TAATTAAGAACTTGCATCGCAGTTGTCTAGAAATCATAAATTCAGAATCT
GAAGCTCAATGCTGTGCATGACTGTTTTGGAACCTACTCTACTTTTATTT
CAAAATAGGGAACTCAAATTTATGTAGGTGAGCTGCAAGGAAAAGCAATG
AAAAGTCATAAAAGAAAAAAAGTATCAAATTGGCTTAAGGCTGCATACCT
AATATCTGTTATGAACAAACAAAATACATCTCACTCTTCTGATATAGTAA
TATAAACCCCCAACTGGAGGAGTTTTGGCAAGTATTCCTCTTTCTCATAT
CTTTTGCCTAAATATAATTTATCAACATACCTGGATGAAATTTGAGACCA
ACAGGACTGAGGATAAATATGATATAATGAGAATATGAAAAGTAGAATGA
AAATAAATACTTGAGATTTCTCAGAAAAATAAATGAAGTGACTAATGATC
CTAACTGGAAACCAGAACTCTTGGCAGTAAATCACTTCACTTCTCAGTCA
ACTGGGATGTGGCCAGAAGTTAGGACAAAGGGCAATGGCTAGGATTAGTA
ATATTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_c09.b1 MSMg01no127_c09.b1 CHROMAT_FILE:
MSMg01no127_c09.b1 PHD_FILE: MSMg01no127_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:48 2005
         (361 letters)



>mm_chr2_107180136_107180896
          Length = 761

 Score =  613 bits (317), Expect = e-180
 Identities = 347/357 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatgacctggggaccctctctgtctatcttccttattcattttacatagaatt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatgacttggggaccctctctgtctatcttccttattcattttacatagaatt 264

                                                                       
Query: 65  ttaatctagtttgttttactcagtttatgctaattgattcctgagtcctttcattctctc 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 ttaatctagtttgttttactcagtttatgctaactgattcctgagtcctttcattctctc 324

                                                                       
Query: 125 aattctaccgatataccatcccagccagtgccacttatcttccagaattgatttttaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 aattctaccgatataccatcccagccagtgccacttatcttccagaattaatttttaatt 384

                                                                       
Query: 185 ttatatgcttgtaattcggcattttaatatataatcgcccattaagggacagttacctaa 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 ttatatgcttgtaattcagcattttaatatataatcgcccattaagggacagttacccaa 444

                                                                       
Query: 245 gagtacggcttgtaatgaacagcatgagcccatgggtttattacagggaattattctaga 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 445 gagtatggcttgtaatgaacagcatgagcccatgggtttattacagggaatcattgtaga 504

                                                                    
Query: 305 gctaaatacaggtctctacaacagacaaaagactaaagattgttgttcgtttctgtt 361
           ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 505 gctaaatacaggtctctacaacacacaaaacactaaagattgttgttcgtttctgtt 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no127_c09.g1 MSMg01no127_c09.g1 CHROMAT_FILE:
MSMg01no127_c09.g1 PHD_FILE: MSMg01no127_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:48 2005
         (282 letters)



>mm_chr2_107337442_107338123
          Length = 682

 Score =  491 bits (254), Expect = e-143
 Identities = 275/282 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacagtagctgtttagggaaatatacatttttgttaatgcctcctgctaataactgtc 60
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 attaaagtagctgcttagggaaatatacatttttgttaatgcctcctgctaataactgtc 423

                                                                       
Query: 61  caaaggcaaataccattatataattaagaacttgcatcgcagttgtctagaaatcataaa 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 422 caaaggcaaataccattatataattaagaacttgcatcacagttgtctagaaatcataaa 363

                                                                       
Query: 121 ttcagaatctgaagctcaatgctgtgcatgactgttttggaacctactctacttttattt 180
           ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 362 ttcagaatctggagctcaatgctgtgcatgattgttttggaacctactctacttttattt 303

                                                                       
Query: 181 caaaatagggaactcaaatttatgtaggtgagctgcaaggaaaagcaatgaaaagtcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 302 caaaatagggaactcaaatttatgtaggtgagctgcaaggaaaagcaatgagaagtcata 243

                                                     
Query: 241 aaagaaaaaaagtatcaaattggcttaaggctgcatacctaa 282
           ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 242 aaagaaaaaaagtatcaaattggcttaaggctgaatacctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |