BAC Information

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BAC

Clone NameMSMg01-127O03
Chromosome2 (Build37)
Map Location 139,847,723 - 139,848,357
singlet/doubletsinglet
Overlap geneTasp1
Upstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik
Downstream geneLOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127O03.T7 (MSMg01no127_o03.b1)MSMg01-127O03.TJ (MSMg01no127_o03.g1)
ACCAG336299AG336300
length706708
length of high quality
(start - end)
635 (66 - 700)637 (72 - 708)
definitionCHROMAT_FILE: MSMg01no127_o03.b1 PHD_FILE: MSMg01no127_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:47 2005CHROMAT_FILE: MSMg01no127_o03.g1 PHD_FILE: MSMg01no127_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCAAATTCAAAAAGCTTATTACTTTTGAGATGAATTCCAAATCAAA
CTAACAAGTGTTCAGAAACTCTAGTCAGAAAAATTTCCAACCGTTACCCA
ATGTATTAGAGTTTTGAGCTGCAGCTAAGACATGTCAAAGTACTTGATGC
TCCAATTACAGTTGAACCAGCTTGTTGTCTGAGTGTTTGTGGTGAAAAAG
GTACCCTGAGTCCAAGCCTTCATTTCCTGTCTTGGATTTGCTAACCTCTC
TAAAGTGTATTTAGCTTCCATCACCATTTATCTTACCCTCATTCTTAGTA
GAAAGCTCGCTAGTGCATCATACAATATTTGTGACTATCACTGATGATTG
CCTAGAAAACTCTTATGCCTGCCTGCTTGCCAGTCAGTCATTCCCATATT
TTTCCTTGTTCAGATTCACATCTTTACTGTAGTGTGAATCCTGCTACCAC
AGAGATCTCCTTTGCAGTGTTTCATAGTTGTGTAGCTTTGTACTTCTTAT
TTCCCCTGTGCTACTGTTGATAGACACTATAGACTTTCTCAAAATGGCTT
TCCCTAATTAAGCAGCTAAGGGAGTCATTGAAATGAATGTCTCAAAGCAA
GAGTCATGTGTAGTTGCCTATTAAAACAAACAAACAAACAAACAAACCAA
CCAACC
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTACTGTGCCATGATGCAGTTTGAAAAC
ACCAATTACAAAAGAAGTACTTCTGCTTAATAAAAGTGGAGGGGAAGCTC
TTCCGGTCCGAGGCGCAGTGGGAGCCACAGGTTACCATGCAGAAGAATCA
CACCACACACAACCAGTCCTGCATATGGCACAGAAATGGCATCAAGAAAC
ACCAGTCACAAAGATACAAATCTCTTAAGGGAGTTGGCCAAGTTCCTGAG
GAACATACGCTTTGCCAAGGACACCAAGAAAGGTCTGAAGAAGATGCAGG
CCAACAATGCAAAGGCAGGGGGTGCACTCGCAGAGGCCATCAAGGCCCTT
GCCAAGCCTAAGGCTATCAAGCCCAAGATGCCAAAGGGTCCCAGCCTTGC
ACAGACTCAGCCATCTGACGTTCACTGCTCACCCGAAGCTTAAGAAGTAG
ATTCCAAGCTGCATGGCCAAGGGTCACAGGCTCTGCCAACCAAAGTCCAA
GGGTCAAACCAAGGCAGAGGCCAAAGCTCCAGCTCAGGATCCCAAAGGTG
CCCAGGCCCTTCTGAAGGCCATAGGGAAAAGGCCCCTGCCAATGGGAAGA
CAGATGGACAGCTGTGATATACTATTTCCATATGAACAGTGTCCTATGCT
GTTTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_o03.b1 MSMg01no127_o03.b1 CHROMAT_FILE:
MSMg01no127_o03.b1 PHD_FILE: MSMg01no127_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:47 2005
         (635 letters)



>mm_chr2_139847550_139848584
          Length = 1035

 Score = 1205 bits (623), Expect = 0.0
 Identities = 632/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcttattacttttgagatgaattccaaatcaaactaacaagtgttcagaaactctagt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aagcttattacttttgaggtgaattccaaatcaaactaacaagtgttcagaaactctagt 749

                                                                       
Query: 61  cagaaaaatttccaaccgttacccaatgtattagagttttgagctgcagctaagacatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cagaaaaatttccaaccgttacccaatgtattagagttttgagctgcagctaagacatgt 689

                                                                       
Query: 121 caaagtacttgatgctccaattacagttgaaccagcttgttgtctgagtgtttgtggtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 caaagtacttgatgctccaattacagttgaaccagcttgttgtctgagtgtttgtggtga 629

                                                                       
Query: 181 aaaaggtaccctgagtccaagccttcatttcctgtcttggatttgctaacctctctaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aaaaggtaccctgagtccaagccttcatttcctgtcttggatttgctaacctctctaaag 569

                                                                       
Query: 241 tgtatttagcttccatcaccatttatcttaccctcattcttagtagaaagctcgctagtg 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 568 tgtatttagcttccatcaccatttattttaccctcattcttagtagaaagctcgctagtg 509

                                                                       
Query: 301 catcatacaatatttgtgactatcactgatgattgcctagaaaactcttatgcctgcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 catcatacaatatttgtgactatcactgatgattgcctagaaaactcttatgcctgcctg 449

                                                                       
Query: 361 cttgccagtcagtcattcccatatttttccttgttcagattcacatctttactgtagtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cttgccagtcagtcattcccatatttttccttgttcagattcacatctttactgtagtgt 389

                                                                       
Query: 421 gaatcctgctaccacagagatctcctttgcagtgtttcatagttgtgtagctttgtactt 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaatcctgctatcacagagatctcctttgcagtgtttcatagttgtgtagctttgtactt 329

                                                                       
Query: 481 cttatttcccctgtgctactgttgatagacactatagactttctcaaaatggctttccct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cttatttcccctgtgctactgttgatagacactatagactttctcaaaatggctttccct 269

                                                                       
Query: 541 aattaagcagctaagggagtcattgaaatgaatgtctcaaagcaagagtcatgtgtagtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aattaagcagctaagggagtcattgaaatgaatgtctcaaagcaagagtcatgtgtagtt 209

                                              
Query: 601 gcctattaaaacaaacaaacaaacaaacaaaccaa 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 208 gcctattaaaacaaacaaacaaacaaacaaaccaa 174


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)