BAC Information

Click to search

BAC

Clone NameMSMg01-128A10
Chromosome2 (Build37)
Map Location 32,725,219 - 32,725,521
singlet/doubletsinglet
Overlap genenone
Upstream geneLamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1
Downstream gene9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128A10.T7 (MSMg01no128_a10.b1)MSMg01-128A10.TJ (MSMg01no128_a10.g1)
ACCAG336405AG336406
length708723
length of high quality
(start - end)
234 (129 - 362)303 (73 - 375)
definitionCHROMAT_FILE: MSMg01no128_a10.b1 PHD_FILE: MSMg01no128_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:59 2005CHROMAT_FILE: MSMg01no128_a10.g1 PHD_FILE: MSMg01no128_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTATGTATCCCGAATCCTGCCACGCCTCTCCCTCTCCTGACAGT
ATCCCTTGTCCTTAGAGTCTCCCCCCTGTGGTGTGCTCTCACTTTTTCTT
TCTTCTGTTGCCTGTACTTTCAGTGTTACAAGAAATCATATGAGCTGACT
TGCACTCAGCTGTTCTCTACACCTTAGCTTCCTTATTGGTAAATGGGAAT
ATATGCTATGACTCGGGCGGGGACCGACTCTCCAGGAATTTATGATACAG
AATATGATACAGACAGGAAGCTTATGAAAGAGCCAGTTCCACACATATAG
GACTAATCCACATAAGAATGACCTCAGGGGCTGGAGATGGCTCAGCAGTG
ACAAGCAACTGCTACTCTTCCAGATGACCATAGTTTGGTTCCCAGCACCC
ACACTGGACAGCTCACAAAATGCCTCTAGCTCCAGGGAATCTGGTGTCCT
CTTCTGGCTTTGGTATACACACACACACACTCTCACACACACATACACTC
ACTTAAAATTTAATGGAATCACTAAACTTCCGTGGCTGCTGATACAGAAA
GAACATGACAGCTAATAAAAATCAAGGAGGCCTTTCCTGGTAAAGGTGTC
ATTTGCCTATGTTTAAACTGATAACTACGTGTGATATGCTTGGCCATACC
AAGCTATC
CATTGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAAGTGTCACATTTAGGAATGTGCCAT
CATCTCAAGGACTGTGGGAGCCACAGAAGATTTAAGGTGAAGAACAGCAG
GACCATAGTTGTGTTTTATTAGATCTATGTGAGTGTCCAGTGAGAACTAA
GAGCGAGAACTGATAGACAGGCAAGCAGGCCAACCAAAGACTGACCCTGC
TGGGTCCTGCCTGAGGTGACAGCCCACCTCTGAAGGAGCAAGGGAGTTTC
AAAGAGGCCAGGTTATATGTGGAACCGGCTGCAGTGTGCTTCGGTGCCTC
CCAGTGCCCAAGGGGGAGGTCTGGTCCCAGTGCCAGGGTCCCTTCCGTAT
CATAGGGCCCGCCAACCAGGTAAACAGAGGTGGACACCTGATATTCCTTA
AAACAAAATCGTGATTCATCCTCACCCCCTGCAGTTTACTGACCATGTTT
GTTTGTTTTTTTTTCCTCTCTATTTCAAGTCCTGACAGGTTTGTGTTGCA
AGCATAGTTGGTGCTCATAACCCACCTTGAAGGAATAGAACCCTGGGGGG
CAGGCATTAAAGGAACCTTTCCTTTCTCTTATAGAACCAGTATGGTGCCG
TCCCAATCCTCTCCTGAATACTCTAGAGCAATGCTTTGCTCTGCCTCGGC
TTTTAATCCAAGCTTGGCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_a10.g1 MSMg01no128_a10.g1 CHROMAT_FILE:
MSMg01no128_a10.g1 PHD_FILE: MSMg01no128_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:59 2005
         (303 letters)



>mm_chr2_32725019_32725722
          Length = 704

 Score =  532 bits (275), Expect = e-155
 Identities = 296/303 (97%), Gaps = 1/303 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaagtgtcacatttaggaatgtgccatcatctcaaggactgtgggagccacagaagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagtgtcacatttaggaatgtgccatcatctcaaggactgtgggagccacagaagatt 260

                                                                       
Query: 61  taaggtgaagaacagcaggaccatagttgtgttttattagatctatgtgagtgtccagtg 120
           ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct: 261 taaggtgaagaacagcaggaccatatttgtgctttattagatctttgtgagtgtccagtg 320

                                                                       
Query: 121 agaactaagagcgagaactgatagacaggcaagcaggccaaccaaagactgaccctgctg 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 agaactaagagcgagaactgatagacaggcaggcaggccaaccaaagactgaccctgctg 380

                                                                       
Query: 181 ggtcctgcctgaggtgacag-cccacctctgaaggagcaagggagtttcaaagaggccag 239
           || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccctgcctgaggtgacagtcccacctctgaaggagcaagggagtttcaaagaggccag 440

                                                                       
Query: 240 gttatatgtggaaccggctgcagtgtgcttcggtgcctcccagtgcccaagggggaggtc 299
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttataggtggaaccggctgcagtgtgcttcggtgcctcccagtgcccaagggggaggtc 500

              
Query: 300 tgg 302
           |||
Sbjct: 501 tgg 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 704
Length adjustment: 9
Effective length of query: 294
Effective length of database: 695
Effective search space:   204330
Effective search space used:   204330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)