BAC Information

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BAC

Clone NameMSMg01-128G03
Chromosome2 (Build37)
Map Location 12,752,679 - 12,752,925
singlet/doubletsinglet
Overlap geneLOC100040837
Upstream geneEG635919, LOC667247, Itga8, 2310047O13Rik
Downstream genePter, C1ql3, Rsu1, Cubn, Trdmt1, Vim, St8sia6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128G03.T7 (MSMg01no128_g03.b1)MSMg01-128G03.TJ (MSMg01no128_g03.g1)
ACCAG336667AG336668
length708701
length of high quality
(start - end)
247 (71 - 317)480 (70 - 549)
definitionCHROMAT_FILE: MSMg01no128_g03.b1 PHD_FILE: MSMg01no128_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:27 2005CHROMAT_FILE: MSMg01no128_g03.g1 PHD_FILE: MSMg01no128_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGTTTTCCGGAACATAAGTTCCACTTACATAGTTGCAGGAAGCCA
AAGTCAACCTTGCAAATACCTTCCCCACGATTATCCATTTGAATAATCAC
ATCTCTCCCATTCCCAGAAACCCCTTACTAAGGGCGATTTGCATATGTGG
AATCATCACAAAGGAAGAATGAAGGTTGATGGCAATTTTGAGGGACTGTG
AGAACAGTGGCTCCTAGAAGTTAATAGTGATCAAAATTCCTGCTTGGAAA
ACCTCTGAAGGATTTGGATAGTAACGCTGAAAGGATACATCTCGTCTGTA
GTCTGCAAATGGGAGTCTCAGAAGCCTGTCACTGTGATTACAGAATCTTC
CATTCTGTCTAAGGCCCTAGGAGTCTTACTATGGGCTTTGTATATGCTGA
CCCATTTTCTTTGCAACTGAAGTTAAGGGCATTTCCTTTACCCCTCATGT
CTTCTCCATAGCATCCCATTTGGATACACTTCATTCCTTTTTAATTTTTA
GCAATTTTAGATAAAGACTCACAATACATGTTTCCATTATTAGTGAAAGT
CCATTTGCCACAATAAGTCTCCTCCTCCCCCAATATGTGTGGTGTAGGAT
TGTTGACAGAAATACTAGGACACAAAGCATACTTTGTAATGATTTGTTTA
TTGGGATC
CATGCAGTGGTAGGCTGGCGGCGCCTGTTCTCAAATTTAGGTGACCTATA
GAATTTCTGCGGAATTCCCAGATACAATTCACAAAACACATGAAAGAAGA
AAGACCAAAGTGCCACATTTTGTTCCTTCTTAGAATCAGGAACAAAATAT
CAATGGAAGGAGTTACAGAGACAATGTTCAGAGCAGAGACTGAAGGAATG
AGCATACAGAAACTTCCCCACCTGAGGATCCATCCCATATACAACCACCA
AACCCAGACACTATTGCAGATGCCAACAAGATCTTGCTGACAGATGCCTG
ATACAACTGTCTCCTGATAGGCTCTGCCAGTGCTTGACCAATATAGAAGT
GGATCCTCATTTAGTCATCCATTAGACAGAGCACAGGGTCCCCAATGAAG
GAGCCAGAGAAAGGACCCAAAAAAGTTGAAGGGGTTTTCAGCCCCATAGG
AGGAACAACATGAACTAACCAGTATCCCCAGAGCTCCCAGGGACTAAACC
ACCAACCAAAGAACACACATGATGGTACTCATGGCTCCAGCTGCATATGT
AGCATAGGATGGCCTAGTCAGTCTATGGGAGGAGAGGCTGTTAGTCCTGT
GAAGATTCTATGCCCCAGTGTAGTGGAATGCCAGGACAGGGAAGAGAGAG
TGGGTGCCTTGTTCAGTAGGGAGATGGTGGAGCGTATATTTGATTTTTGG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_g03.b1 MSMg01no128_g03.b1 CHROMAT_FILE:
MSMg01no128_g03.b1 PHD_FILE: MSMg01no128_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:27 2005
         (247 letters)



>mm_chr2_12752479_12753125
          Length = 647

 Score =  424 bits (219), Expect = e-123
 Identities = 240/247 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagttccacttacatagttgcaggaagccaaagtcaaccttgcaaataccttccccacga 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||  || |||||||
Sbjct: 447 aagttccacttacatagttgcaggaagccaaagtcaacctttcaaataattttcccacga 388

                                                                       
Query: 61  ttatccatttgaataatcacatctctcccattcccagaaaccccttactaagggcgattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttatccatttgaataatcacatctctcccattcccagaaaccccttactaagggcgattt 328

                                                                       
Query: 121 gcatatgtggaatcatcacaaaggaagaatgaaggttgatggcaattttgagggactgtg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gcacatgtggaatcatcacaaaggaagaatgaaggttgatggcaattttgagggactgtg 268

                                                                       
Query: 181 agaacagtggctcctagaagttaatagtgatcaaaattcctgcttggaaaacctctgaag 240
           || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agcacagtgactcctagaagttaatagtgatcaaaattcctgcttggaaaacctctgaag 208

                  
Query: 241 gatttgg 247
           |||||||
Sbjct: 207 gatttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)