Query= MSMg01no128_l20.b1 MSMg01no128_l20.b1 CHROMAT_FILE:
MSMg01no128_l20.b1 PHD_FILE: MSMg01no128_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:56 2005
(528 letters)
>mm_chr2_166730269_166731196
Length = 928
Score = 942 bits (487), Expect = 0.0
Identities = 515/529 (97%), Gaps = 11/529 (2%)
Strand = Plus / Plus
Query: 4 ggaattcatggcaagct-ggccagcctgtcctttactggctaaaacgcaaagtgagccag 62
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatggcaagctagg-cagcctgtcctttactggctaaaacgcaaagtgagccag 262
Query: 63 ctactcctggacctagagacaggaaggaacacatatcagtgcagtaaagtggggtaagct 122
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctactcctggacccagagacaggaaggaacacatatcagtgcagtaaagtggggtaagct 322
Query: 123 tgtagcagagaggaacagagaaggcaagctaagctggcttcttcagcccggtcttactac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgtagcagagaggaacagagaaggcaagctaagctggcttcttcagcccggtcttactac 382
Query: 183 agaacactaggcttcagtcttgatcaaaaacctgcttctagaccttcacctttctttgct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agaacactaggcttcagtcttgatcaaaaacctgcttctagaccttcacctttctttgct 442
Query: 243 tgcgaggcgtacagtcacacaactgtctcctggcttttgaaaagataagttttctcttgt 302
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 443 tgcgaggcgtacagtcacacaactgtctcctggcttttgaaaagataagatttctcttgt 502
Query: 303 tcaagggtcaaatgaacatcccagttacctttaagttgccaccaactacatcgtcgtctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcaagggtcaaatgaacatcccagttacctttaagttgccaccaactacatcgtcgtctg 562
Query: 363 aaaaaa----ttttccccttttttgagaaaggatctcactgtgtagctatgcctggcctc 418
|||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaaaaaaaaatttt-----tttttgagaaaggatctcactgtgtagctatgcctggcctc 617
Query: 419 tgtgtagaccatgctgggctcaaataaatggcgattgtcttgcttctgcctcccaagtgc 478
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgtgtagaccatgctgggcttaaataaatggcgattgtcttgcttctgcctcccaagtgc 677
Query: 479 caagtggtaacaagcatgagccatcgccttcagcttctgaaatcatgtg 527
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 caagtggtaacaagcatgagccatcgccttcagcttctgaaatcatgtg 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_l20.g1 MSMg01no128_l20.g1 CHROMAT_FILE:
MSMg01no128_l20.g1 PHD_FILE: MSMg01no128_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:56 2005
(453 letters)
>mm_chr2_166841846_166842697
Length = 852
Score = 806 bits (417), Expect = 0.0
Identities = 444/453 (98%), Gaps = 1/453 (0%)
Strand = Plus / Minus
Query: 1 catacctatgtaagatcccgtctctaagcaaggtggacaactggagtaacagcccacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 catacctatgtaagatcccgtctctaagcaaggtggacaactggagtaacagcccacaaa 675
Query: 61 gttgttctctggccccacacacgtgcatgtgaacaagtacgcgcacaagaacatgtacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gttgttctctggccccacacacgtgcatgtgaacaagtacgcgcacaagaacatgtacac 615
Query: 121 aggcacacatatgaatgtgcataaacaatgcaaacagcaacaggactgtcagaagctcaa 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 614 aggcacacatatgaatgtgcataaacaatgcaaacagcaacaggaccgtcagaagctcaa 555
Query: 181 atgtatccaagatccagtttcaaaaggaaacacaaaactgatacagaattggataccaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atgtatccaagatccagtttcaaaaggaaacacaaaactgatacagaattggataccaac 495
Query: 241 aagcttcttatggagtgaggcactgctctagttctgccttacagagcaggtaatacatga 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aagcttcttacggagtgaggcactgctctagttctgccttacagagcaggtaatacatga 435
Query: 301 gctaagtctctcccggccaccacccagtacgtgccaggagagaccacactcatcttccaa 360
|||||||||||||||||||||||||||||| ||||||||||||| | | ||||| ||||
Sbjct: 434 gctaagtctctcccggccaccacccagtacatgccaggagagacaa-agtcatcctccat 376
Query: 361 cctggacaccaaggtgcttgctcccaaacctggatcgatttaaaatgcctcatgccaatg 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cctggacaccaaggtacttgctcccaaacctggatcgatttaaaatgcctcatgccaatg 316
Query: 421 gcagacatcagaaaactgttgtcctgtacagtg 453
|||||||||||||||||||||||||||||||||
Sbjct: 315 gcagacatcagaaaactgttgtcctgtacagtg 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 852
Length adjustment: 10
Effective length of query: 443
Effective length of database: 842
Effective search space: 373006
Effective search space used: 373006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
